CX294578

Overview
NameCX294578
Unique NameCX294578
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_PONAB (Mitochondrial import inner membrane translocase subunit TIM50 OS=Pongo abelii GN=TIMM50 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 37/110 (33.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP ++   ++++ L+EI+IFT+   + A  L++ +DP      +R+FR++  ++DG+++KD+S L RD + V++VD   +AF  Q  NG+ +  W  +  D+ LL L  F
Sbjct:  174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAF 282          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_HUMAN (Mitochondrial import inner membrane translocase subunit TIM50 OS=Homo sapiens GN=TIMM50 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 37/110 (33.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP ++   ++++ L+EI+IFT+   + A  L++ +DP      +R+FR++  ++DG+++KD+S L RD + V++VD   +AF  Q  NG+ +  W  +  D+ LL L  F
Sbjct:  174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAF 282          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_BOVIN (Mitochondrial import inner membrane translocase subunit TIM50 OS=Bos taurus GN=TIMM50 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 37/110 (33.64%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP ++   ++++ L+EI+IFT+   + A  L++ +DP      +R+FR++  ++DG+++KD+S L RD + V++VD   +AF  Q  NG+ +  W  +  D+ LL L  F
Sbjct:  176 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAF 284          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_CRYNE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Cryptococcus neoformans GN=TIM50 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP +  FL  +S  +EI++F++     A  +   +DP +    +R+FRES   V G  +KD+S L RD S VI++D +P+    Q +NGI ++ W     D+ L+ ++PF
Sbjct:  262 RPGVDYFLGYLSQFYEIVLFSSQPLYTAAPIAEKIDPYQAFMPYRLFRESTRSVKGKVVKDISFLNRDPSKVIVLDVNPEHVALQPENGIVLQPWNGSPGDKGLVDMIPF 371          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_DANRE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Danio rerio GN=timm50 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.356e-13
Identity = 38/110 (34.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP +    ++++ L+EI+IFT+   + A  L++ +DP+  +  +R+FR++  +++G+++KD+S L RD S VI+VD   +AFG Q  NG+ +  W  +  D+ L  L  F
Sbjct:  209 RPGIDYLFQQLAPLYEIVIFTSETGMTAYPLIDSIDPQGFVM-YRLFRDATRYMEGHHVKDVSCLNRDTSKVIVVDCKREAFGLQPFNGLALCKWDGNSEDRTLYDLAAF 317          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TIM50_MOUSE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Mus musculus GN=Timm50 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 36/110 (32.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  296 RPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            RP ++   ++++ L+EI+IFT+   + A  L++ +DP      +R+FR++  +++G+++KD+S L RD + V++VD   +AF  Q  NG+ +  W  +  D+ LL L  F
Sbjct:  174 RPGIETLFQQLAPLYEIVIFTSETGMTAFPLIDSVDP-HGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDRVLLDLSAF 282          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TI50C_DROME (Mitochondrial import inner membrane translocase subunit TIM50-C OS=Drosophila melanogaster GN=ttm50 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  239 DFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            D+T+   +  +K       RP +  FL   +  FEI++FTA Q +    +L+ LDP   +  +R+ R++  FVDG+++K+L  L RDL  VI+VD    A     DN   +  W  +  D +LL L+ F
Sbjct:  243 DWTYQTGWRFKK-------RPGVDHFLAECAKDFEIVVFTAEQGMTVFPILDALDPNGYIM-YRLVRDATHFVDGHHVKNLDNLNRDLKKVIVVDWDANATKMHPDNTFGLARWHGNDDDGQLLDLIAF 363          
BLAST of CX294578 vs. ExPASy Swiss-Prot
Match: TI50A_DROME (Mitochondrial import inner membrane translocase subunit TIM50-A OS=Drosophila melanogaster GN=ttm3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.175e-12
Identity = 43/129 (33.33%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  239 DFTFPVNFNLQKHTVYVRCRPYLKDFLERVSSLFEIIIFTASQSIYAEQLLNVLDPKRKLFRHRVFRESCVFVDGNYLKDLSVLGRDLSHVIIVDNSPQAFGFQVDNGIPIESWFDDRSDQELLRLLPF 625
            D+T+   +  +K       RP +  FL++ S  FEI+I+T+ Q + A  LL+ LDP   + ++R+ R +   V+G + K+L  L RDLS VI+VD  P       DN + +  W  +  D +L  L  F
Sbjct:  154 DWTYQTGWRFKK-------RPGVDYFLQQCSRNFEIVIYTSEQGMTAFPLLDALDPYGYI-KYRLVRGATDLVEGQHTKNLDYLNRDLSRVIVVDCDPYTTPLHPDNSLVLTKWLGNDDDVQLFDLTAF 274          
The following BLAST results are available for this feature:
BLAST of CX294578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
TIM50_PONAB1.967e-1333.64Mitochondrial import inner membrane translocase su... [more]
TIM50_HUMAN1.967e-1333.64Mitochondrial import inner membrane translocase su... [more]
TIM50_BOVIN1.967e-1333.64Mitochondrial import inner membrane translocase su... [more]
TIM50_CRYNE2.570e-1334.55Mitochondrial import inner membrane translocase su... [more]
TIM50_DANRE3.356e-1334.55Mitochondrial import inner membrane translocase su... [more]
TIM50_MOUSE5.724e-1332.73Mitochondrial import inner membrane translocase su... [more]
TI50C_DROME1.666e-1233.33Mitochondrial import inner membrane translocase su... [more]
TI50A_DROME2.175e-1233.33Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionC05054F02SK FlavRip1 Citrus clementina cDNA clone C05054F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294578 ID=CX294578; Name=CX294578; organism=Citrus clementina; type=EST; length=635bp
TGATGAGTATGGTCAAGAGTCTATGACTGATGTTTGCATGGAGGATGATG
ACTATGAGGAATTTGATGACTTTGATCCTTATTTATTTATAAAAAACTTG
CCAGAATTGTCATCAGTGGTCCCCACTTTTCGGCCTATGTTGCTACCTAA
GCAGACACGGAGTTGCCCCCCTACTACTCTTGTTTTGGACTTGGACGAAA
CTCTGGTGCATTCCACTCTAGAGCCCTGTGATGATGCAGACTTCACATTC
CCTGTAAATTTTAACCTCCAAAAGCATACAGTTTATGTTCGATGCCGTCC
TTATCTCAAAGATTTCTTGGAGAGAGTTTCCAGTCTTTTTGAGATAATCA
TATTCACCGCCAGTCAAAGTATCTATGCAGAGCAGCTTCTAAATGTGCTC
GATCCTAAGAGAAAATTATTTCGGCATCGTGTTTTCCGTGAATCATGTGT
TTTTGTGGATGGCAATTACCTCAAAGATTTGTCAGTTCTTGGCCGTGATT
TGTCACATGTTATCATAGTTGACAACTCCCCACAGGCATTCGGGTTCCAA
GTGGACAATGGAATTCCAATTGAGAGCTGGTTTGATGATCGATCAGATCA
AGAATTGCTTCGATTACTACCATTTTTTGGAGAGC
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