CX294589

Overview
NameCX294589
Unique NameCX294589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.993e-18
Identity = 54/178 (30.34%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   72 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEE---NKITDFIKFDVGNIVM 596
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D    + D+I L L+E   N+I D   F  GN+ M
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAM 179          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRT 488
            +K+HL+ L  P+ W +  K  G +  KPS GPH     +P+ + LR+ L  A   REV  +L    VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT
Sbjct:    5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRT 147          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.380e-17
Identity = 51/167 (30.54%), Postives = 86/167 (51.50%), Query Frame = 3
Query:   72 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXAND-----TIKLDLEENKI 557
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNI 169          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALV 176          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +  H KRL+ PK W +++    F  K  +GPH     +PL++VLR+ L+Y     E    +    VLV+G    D   P G  D+++ P  +E +R+  D  GR  L  +  + A  KL KV        G   +N +DG  +   +      D++ +D + N+I    +++ G +V
Sbjct:    1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALV 176          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 50/178 (28.09%), Postives = 90/178 (50.56%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK  +D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E+ ++    +++ G +V
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALV 177          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 48/182 (26.37%), Postives = 88/182 (48.35%), Query Frame = 3
Query:   51 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGNIVM 596
            MA+G+KKH KR+++       K  G F  K SSGPH   + + L+ +++     A   +E   ++    + V+GK      +P   MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     I   D++ +    ++I   +KF+VG++ +
Sbjct:    1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCL 182          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   72 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI 491
            H+ RL AP      K    +  + S GPH   + +PL L+LR+ L +  + +E   I+    VLVDG+VR D  YP G MDV++IP  +   R++ D     +   + +EE+KFKL ++ +    + G+   N  DGR +
Sbjct:    3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNL 142          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 53/170 (31.18%), Postives = 81/170 (47.65%), Query Frame = 3
Query:   78 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIXANDTIKLDLEENKITDFIKFDVGN 587
            KRL   +   + +    + P P+ G H   + + L+ ++R+ LK +   RE   IL    V VDGK   +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D      D   + + + KI++ IK   GN
Sbjct:    6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGN 173          
BLAST of CX294589 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 3
Query:   63 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIXANDTIKLDLEENKITDFIKFDVGNIV 593
            +  H KRL  PK W +++   A+  K ++GPH   E +PL++VLR+ L Y  + +E    L Q  +L++G   +D+  P G  D+++  +  E +R+  D  GR  L  + ++ A  KL K+        G   ++ +DG T+   D      ND+I +  +  +I     ++ G +V
Sbjct:    1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALV 177          
The following BLAST results are available for this feature:
BLAST of CX294589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METHJ3.993e-1830.3430S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_NANEQ1.162e-1738.8930S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_SULTO3.380e-1730.5430S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_HALSA1.087e-1528.2530S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALS31.087e-1528.2530S ribosomal protein S4e OS=Halobacterium salinar... [more]
RS4E_HALMA1.087e-1528.0930S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4_BIGNA1.420e-1526.3740S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METS51.420e-1533.5730S ribosomal protein S4e OS=Metallosphaera sedula... [more]
RS4E_THEAC1.855e-1531.1830S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_NATPD2.423e-1528.0930S ribosomal protein S4e OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionC05054G07SK FlavRip1 Citrus clementina cDNA clone C05054G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294589 ID=CX294589; Name=CX294589; organism=Citrus clementina; type=EST; length=598bp
AGAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAA
ATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCA
CTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTG
GTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAAC
CGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCA
ACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACCCTG
CTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTCCGT
CTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGA
GGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCCAGA
AAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTACCCT
GACCCACTCATCANAGCCAATGATACCATCAAACTTGACTTAGAAGAGAA
CAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGGT
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