CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP3_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.296e-24
Identity = 50/108 (46.30%), Postives = 76/108 (70.37%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N +C DC AP+P WAS N+G  +C++C G+HR LG H+S+V S+ LDDW   E+ A++   GN+ AN+++E  + +G SKPGP++  E + ++IR+KYE + FL P
Sbjct:  671 RGNSLCIDCEAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW-PPELLAVMTAMGNALANSVWEGAL-DGYSKPGPEACREEKERWIRAKYEQKLFLAP 776          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP2_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.296e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            + N IC DCGAP+P WAS N+G  IC++C G+HR+LGTH+S+V S+ LDDW   E+  ++   GN +AN ++E+    G +KP  DSS E R  +IR+KYE   FL P
Sbjct:  941 KGNSICVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW-PRELTLVLTAIGNDTANRVWES-DTRGRAKPSRDSSREERESWIRAKYEQLLFLAP 1046          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP3_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.916e-24
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC AP+P WAS N+G  +C++C G+HR LG H+S+V S+ LDDW   E+ A++   GN+ AN+++E  +  G SKPGPD+  E + ++IR+KYE + FL P
Sbjct:  636 RGNSFCIDCDAPNPDWASLNLGALMCIECSGIHRHLGAHLSRVRSLDLDDW-PPELLAVMTAMGNALANSVWEGAL-GGYSKPGPDACREEKERWIRAKYEQKLFLAP 741          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP2_RAT (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.433e-23
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            + N  C DCGAP+P WAS N+G  IC++C G+HR+LGTH+S+V S+ LDDW   E+  ++   GN +AN ++E+    G +KP  DSS E R  +IR+KYE   FL P
Sbjct:  935 KGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW-PRELTLVLTAIGNDTANRVWES-DTRGRAKPTRDSSREERESWIRAKYEQLLFLAP 1040          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP2_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.433e-23
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            + N  C DCGAP+P WAS N+G  IC++C G+HR+LGTH+S+V S+ LDDW   E+  ++   GN +AN ++E+    G +KP  DSS E R  +IR+KYE   FL P
Sbjct:  935 KGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDW-PRELTLVLTAIGNDTANRVWES-DTRGRAKPTRDSSREERESWIRAKYEQLLFLAP 1040          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ADAP1_HUMAN (Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.433e-23
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 3
Query:    3 DLLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            +LL +  N  CADCGAPDP WAS  +GVFICL C G+HR++   VSKV SV LD W + +V+ M    GN +A A +E+ +P    +P P     +R ++IR+KYE QEF+ P
Sbjct:   11 ELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYP 121          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP3_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ACAP3 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.704e-22
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIP-EGVSKPGPDSSHEIRSKFIRSKYELQEFLK 338
            N  C DCG PDP+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GNS+ N IYEA     G  KP   SS + +  +I+ KY  ++FL+
Sbjct:  415 NSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLDSWEPELLKLMCEL-GNSAVNQIYEAQCEGAGSRKPTASSSRQDKEAWIKDKYVEKKFLR 519          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP2_CHICK (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.795e-22
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLK 338
            N  C DCG  DP+WAS N+G+ +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GN   N IYEA + + GV KP P S  + +  +I++KY  ++F++
Sbjct:  411 NAACCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDSWEPELLKLMCEL-GNDVINRIYEAKLEKMGVKKPQPGSQRQEKEMYIKAKYVERKFVE 515          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD5_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYE 320
            LL   +NR CADC    P+WAS N+G+FIC++C G+HRSLG H+SKV S TLD W  ++V A I+  GN  AN+ +EA +P    + G ++       FIR+KYE
Sbjct:   22 LLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQV-AFIQSMGNDKANSYWEAELPPNYDRVGIEN-------FIRAKYE 118          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGD15_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD15 OS=Arabidopsis thaliana GN=AGD15 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.104e-21
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    6 LLLQRDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            LL   DNR CADC +  P+WAS N+G+FIC++C G+HRSLG H+S+V S+TLD W  D+V A ++  GN+  N  +E+ +P+   +   D+       FIR+KY  + ++ P
Sbjct:   22 LLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLPDQV-AFMKSTGNAKGNEYWESELPQHFERSSSDT-------FIRAKYSEKRWVSP 125          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGAP3_MOUSE5.296e-2446.30Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_HUMAN5.296e-2449.07Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP3_HUMAN6.916e-2447.22Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_RAT3.433e-2348.15Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP2_MOUSE3.433e-2348.15Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ADAP1_HUMAN3.433e-2347.79Arf-GAP with dual PH domain-containing protein 1 O... [more]
ACAP3_HUMAN1.704e-2248.11Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_CHICK3.795e-2245.28Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGD5_ARATH1.104e-2147.62Probable ADP-ribosylation factor GTPase-activating... [more]
AGD15_ARATH1.104e-2142.86Probable ADP-ribosylation factor GTPase-activating... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
back to top