CX294598

Overview
NameCX294598
Unique NameCX294598
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP1_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 2.460e-21
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +P WAS N+G  +C++C G+HR+LGTH+S+V S+ LDDW  + +  M  + GN  AN+++E    +G +KP  DS+ E + ++IR+KYE + FL P
Sbjct:  619 RGNSHCVDCETQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPVELIKVMSSI-GNELANSVWEE-SSQGRTKPSVDSTREEKERWIRAKYEQKLFLAP 724          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP1_MOUSE (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Agap1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.213e-21
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +P WAS N+G  +C++C G+HR+LGTH+S+V S+ LDDW  + +  M  + GN  AN+++E    +G +KP  DS+ E + ++IR+KYE + FL P
Sbjct:  619 RGNSHCVDCDTQNPNWASLNLGALMCIECSGIHRNLGTHLSRVRSLDLDDWPMELIKVMSSI-GNELANSVWEEG-SQGRTKPSLDSTREEKERWIRAKYEQKLFLAP 724          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGA11_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 11 OS=Homo sapiens GN=AGAP11 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRSLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP  +S+ E + ++IRSKYE + FL P
Sbjct:  338 RGNSHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGQTKPSIESTREEKERWIRSKYEHKLFLAP 443          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP1_BOVIN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Bos taurus GN=ACAP1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 60/152 (39.47%), Postives = 80/152 (52.63%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFLK--PSLR-------IASGKPSASLQSSFSRKIIDSFRSTNSSQKKDV 449
            N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+ GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL   P +R          G P    +    R    SFRS      +D+
Sbjct:  417 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVVINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGHPPVPPKPGLIRPKPGSFRSKPEPPSEDL 567          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: AGAP4_HUMAN (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 4 OS=Homo sapiens GN=AGAP4 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   18 RDNRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPDSSHEIRSKFIRSKYELQEFLKP 341
            R N  C DC   +PKWAS N+GV +C++C G+HRSLGT +S+V S+ LDDW  +    M  + GN  AN+I+E    +G +KP   S+ E + ++IRSKYE + FL P
Sbjct:  451 RGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRLSRVRSLELDDWPVELRKVMSSI-GNDLANSIWEG-SSQGQTKPSEKSTREEKERWIRSKYEEKLFLAP 556          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP1_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Acap1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+ GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL
Sbjct:  417 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 520          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP1_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=ACAP1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DC  P P+WAS N+GV +C++C G+HRSLG H SKV S+TLD W  + V  M E+ GN   N IYEA +    V KPGP  S + +  +I +KY  ++FL
Sbjct:  417 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFL 520          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: UCP3_SCHPO (UBA domain-containing protein 3 OS=Schizosaccharomyces pombe GN=ucp3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 55/143 (38.46%), Postives = 84/143 (58.74%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPEGVSKPGPD---SSHEIRSKFIRSKYELQEFLKPSLRIASGKPSASLQSSFSRKIIDSFRSTNSSQKK 443
            N +CADC     +WAS N+G+F+CL+C  +HR LGTHVSKV S++LD+WS+D+++ M +  GN +AN  +    P  +S P P    S   +  K+IR KYE + FL  +    S  PS   ++  S +      ST++S+ +
Sbjct:   20 NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKM-KHWGNINANRYWN---PNPLSHPLPTNALSDEHVMEKYIRDKYERKLFLDENHSTNSKPPSLPPRTKSSSQ-SSPMASTSTSKSR 157          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP2_RAT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DCG  DP+WAS N+G+ +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GN   N +YEA + + GV KP P    E +  +IR+KY  ++F+
Sbjct:  411 NTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCEL-GNDVINRVYEAKLEKMGVKKPQPGQRQE-KEAYIRAKYVERKFV 513          
BLAST of CX294598 vs. ExPASy Swiss-Prot
Match: ACAP2_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 3
Query:   24 NRICADCGAPDPKWASANIGVFICLKCCGVHRSLGTHVSKVLSVTLDDWSDDEVDAMIEVGGNSSANAIYEAFIPE-GVSKPGPDSSHEIRSKFIRSKYELQEFL 335
            N  C DCG  DP+WAS N+G+ +C++C G+HRSLG H SKV S+TLD W  + +  M E+ GN   N +YEA + + GV KP P    E +  +IR+KY  ++F+
Sbjct:  411 NTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLDTWEPELLKLMCEL-GNDVINRVYEAKLEKMGVKKPQPGQRQE-KEAYIRAKYVERKFV 513          
The following BLAST results are available for this feature:
BLAST of CX294598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
AGAP1_HUMAN2.460e-2143.52Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGAP1_MOUSE3.213e-2143.52Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
AGA11_HUMAN4.196e-2146.30Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ACAP1_BOVIN4.196e-2139.47Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
AGAP4_HUMAN5.480e-2146.30Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
ACAP1_MOUSE5.480e-2147.62Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP1_HUMAN5.480e-2147.62Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
UCP3_SCHPO9.348e-2138.46UBA domain-containing protein 3 OS=Schizosaccharom... [more]
ACAP2_RAT9.348e-2145.71Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_MOUSE9.348e-2145.71Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

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Properties
Property NameValue
Genbank descriptionC05054H09SK FlavRip1 Citrus clementina cDNA clone C05054H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294598 ID=CX294598; Name=CX294598; organism=Citrus clementina; type=EST; length=623bp
AGGATTTATTGCTTCAACGGGATAATCGCATTTGTGCTGATTGTGGTGCT
CCAGATCCTAAATGGGCGTCAGCAAATATCGGAGTGTTTATATGCTTAAA
ATGTTGTGGCGTGCACAGAAGCCTCGGTACGCATGTCTCGAAGGTTTTGT
CTGTGACATTGGATGACTGGTCTGATGATGAAGTTGATGCCATGATTGAA
GTTGGAGGAAATTCATCTGCTAATGCAATTTATGAGGCTTTTATACCCGA
AGGTGTTTCAAAGCCTGGACCAGATTCCAGTCATGAGATACGTTCGAAGT
TTATCAGGTCTAAGTATGAACTCCAAGAATTTTTGAAACCTAGCTTGCGG
ATTGCATCAGGAAAGCCTTCTGCCTCTCTCCAATCAAGTTTTTCTCGAAA
AATTATAGATAGCTTTCGAAGTACAAACTCATCGCAGAAAAAAGACGTAG
GCATGGTAGAGTTTATCGGCTTATTGAAAGTCAAAGTGGTAAAAGGCATA
AATTTAGCTATCAGAGATATGATGTCAAGTGATCCTTACGTAGTTCTGCG
TCTTGGACAGCAGACCGTGCAAACGACTATAGTAAAGAGCAACTTGAATC
CAGTTTGGAATGAGGAGCTCATG
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