CX294722

Overview
NameCX294722
Unique NameCX294722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 2.312e-101
Identity = 179/199 (89.95%), Postives = 193/199 (96.98%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETG++KPGMVVTF P+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+ AANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSE++TKIDRRSGKE+EKEPKFLKNGDAGMVKM PTKPMVVETFS+YPPLGRFAVRDMRQTVAV VIK+V+KKDPTGAKVTK+A KK
Sbjct:  248 GTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAAVKK 446          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 6.727e-101
Identity = 180/199 (90.45%), Postives = 193/199 (96.98%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETG +KPGMVVTFGPSGLTTEVKSVEMHHE+L EALPGDNVGFNVKNV+VKDLKRG+VASNSKDDPA+ AA+FTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF+EL+TKIDRRSGKELEKEPKFLKNGDAGMVKM+PTKPMVVETF++YPPLGRFAVR MRQTVAV VIK VEKKDPTGAKVTK+AAKK
Sbjct:  248 GTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMLPTKPMVVETFAEYPPLGRFAVRVMRQTVAVGVIKAVEKKDPTGAKVTKAAAKK 446          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 1.657e-99
Identity = 177/199 (88.94%), Postives = 190/199 (95.48%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETGV+KPGMVVTFGP+GLTTEVKSVEMHHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAV VIK+VEKK+PTGAKVTK+A KK
Sbjct:  248 GTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGAKVTKAAIKK 446          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 4.821e-99
Identity = 176/199 (88.44%), Postives = 190/199 (95.48%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETGV+KPGMVVTFGP+GLTTEVKSVE+HHE+L EALPGDNVGFNVKNVAVKDLKRG+VASNSKDDPA+EAANFT+QVIIMNHPGQI NGYAPVLDCHTSHIAVKF+E+ TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDMRQTVAV VIK+VEKK+PTGAKVTK+A KK
Sbjct:  248 GTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEVHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDMRQTVAVGVIKSVEKKEPTGAKVTKAAIKK 446          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A2_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis GN=eef1ao PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.758e-85
Identity = 152/198 (76.77%), Postives = 175/198 (88.38%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAK 596
            GTVP+GRVETGVLKPGM+VTF PS +TTEVKSVEMHHEALQEALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VE+FSDYPPLGRFAVRDMRQTVAV VIK V+KK  +  KVTKSA K
Sbjct:  260 GTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKGVDKKAASSGKVTKSAVK 457          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 8.826e-85
Identity = 153/198 (77.27%), Postives = 175/198 (88.38%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAK 596
            GTVP+GRVETGVLKPGM+VTF PS +TTEVKSVEMHHEAL EALPGDNVGFNVKN++VKD++RG VA +SK+DP  +A +FT+QVII+NHPGQI  GYAPVLDCHT+HIA KF+EL  KIDRRSGK+LE +PKFLK+GDA +V+MIP KPM VETFSDYPPLGRFAVRDMRQTVAV VIK V+KK  +  KVTKSAAK
Sbjct:  260 GTVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVIKGVDKKLASSGKVTKSAAK 457          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 5.721e-84
Identity = 146/201 (72.64%), Postives = 179/201 (89.05%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKKSE 605
            GTVP+GRVETG++KPGMVV+F PS +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG VAS+SK+DPA+EAA+F +QVI++NHPGQIG GYAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAV VIK+VEK +  G KVTKSA K ++
Sbjct:  260 GTVPVGRVETGIIKPGMVVSFAPSNVTTEVKSVEMHHEQLAEGLPGDNVGFNVKNVSVKDIRRGDVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKGGKVTKSAEKAAK 460          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 309.686 bits (792), Expect = 7.472e-84
Identity = 148/201 (73.63%), Postives = 175/201 (87.06%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKKSE 605
            GTVP+GRVETGV+KPG VVTF P+ +TTEVKS+EMHHE L EA PGDNVGFNVKNV+VKD++RG V  N+K+DP +EAA+FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KF+E+ +KIDRRSGKELEK PK +K+GDA +V+M+P KPM VE F+DY PLGRFAVRDMRQTVAV +IK V KKD +G KVTK+A K S+
Sbjct:  248 GTVPVGRVETGVMKPGDVVTFAPANVTTEVKSIEMHHEQLAEATPGDNVGFNVKNVSVKDIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKAVTKKDGSGGKVTKAAVKASK 448          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 7.472e-84
Identity = 148/199 (74.37%), Postives = 175/199 (87.94%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETGV+KPGMVVTF P  +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAV VIK V K D +G KVTKSAAKK
Sbjct:  260 GTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDPPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSGGKVTKSAAKK 458          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.275e-83
Identity = 148/199 (74.37%), Postives = 175/199 (87.94%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETGV+KPGMVVTF P  +TTEVKSVEMHHE+L EA PGDNVGFNVKNV+VKD++RG V S+SK+DPA+E+ +FT+QVI+MNHPGQIG GY PVLDCHT+HIA KF+EL  K+DRR+GK++E  PKFLK+GDAG+V++IPTKP+ VE F+DY PLGRFAVRDMRQTVAV VIK V K D +G KVTKSAAKK
Sbjct:  260 GTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAQPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKSFTAQVIVMNHPGQIGAGYTPVLDCHTAHIACKFAELKEKVDRRTGKKVEDLPKFLKSGDAGIVELIPTKPLCVEAFTDYAPLGRFAVRDMRQTVAVGVIKGVTKDDGSGGKVTKSAAKK 458          
The following BLAST results are available for this feature:
BLAST of CX294722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
EF1A_ARATH2.312e-10189.95Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A1_DAUCA6.727e-10190.45Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A2_HORVU1.657e-9988.94Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU4.821e-9988.44Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A2_XENLA6.758e-8576.77Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A3_XENLA8.826e-8577.27Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]
EF1A_PIRIN5.721e-8472.64Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_TRYBB7.472e-8473.63Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A2_OSCTI7.472e-8474.37Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI1.275e-8374.37Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]

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Properties
Property NameValue
Genbank descriptionC05055B09SK FlavSen1 Citrus clementina cDNA clone C05055B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294722 ID=CX294722; Name=CX294722; organism=Citrus clementina; type=EST; length=608bp
TTGGAACCGTCCCATTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGT
ATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTC
ACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCC
GTTAGGGACATGCGTCAGACTGTTGCTGTTGNTGTGATTAAGAATGTTGA
AAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGA
GTGAATCG
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