CX294722

Overview
NameCX294722
Unique NameCX294722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.846e-75
Identity = 128/191 (67.02%), Postives = 164/191 (85.86%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAK 575
            GTVP+GRVETG+++PGM VTF P+G+TTEVKSVEMHHE + EA+PGDNVGFNVKNV++KD+KRGFVAS++K+DPA+   +FT+QVI++NHPG+I NGY+PV+DCHT+HI+ KF  +  K+D+RSGK LE+ PK +K+GDA +V M P KP+ VE F+DYPPLGRFAVRDM+QTVAV VIK+V KK+ T  K
Sbjct:  244 GTVPVGRVETGIIRPGMNVTFAPAGVTTEVKSVEMHHEQMPEAVPGDNVGFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLNHPGEIKNGYSPVVDCHTAHISCKFQTITAKMDKRSGKVLEENPKLIKSGDAALVVMQPLKPLCVEAFTDYPPLGRFAVRDMKQTVAVGVIKSVTKKEATSKK 434          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 2.040e-73
Identity = 135/204 (66.18%), Postives = 165/204 (80.88%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKE---PKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKKSE 605
            GTVP+GRVETG++KPGMVVTF P+GL+TEVKSVEMHHE L EA PGDNVGFNVKNV+VK++KRG VA +SK+DP +E   F +QVI++NHPGQI  GY+PVLDCHT+HIA KF+E+V K+DRR+G  + KE      LKNGDA MV++ P++PM VE+F++YPPLGRFAVRDMRQTVAV VIK+  KK P  A   K AA  S+
Sbjct:  248 GTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSK 451          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.255e-72
Identity = 129/186 (69.35%), Postives = 154/186 (82.80%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKD 560
            GTVP+GRVETGV+KPGM + F P+ +  E KSVEMHHE L EA+PGDNVGFN+K V+VKD++RG VAS++K+DPA+EAA F SQVIIMNHPGQI  GY PVLDCHT+HIA KF  +  KIDRR+GK  E+ PKF+KNGDA +V +IPTK + VE F +YPPLGR+AVRDM+QTVAV VIK VEKKD
Sbjct:  249 GTVPVGRVETGVIKPGMSIQFAPNKVIAECKSVEMHHEQLPEAVPGDNVGFNIKGVSVKDIRRGNVASDAKNDPAKEAATFYSQVIIMNHPGQIQAGYTPVLDCHTAHIACKFETIHDKIDRRTGKSQEENPKFIKNGDAALVTLIPTKALCVEVFQEYPPLGRYAVRDMKQTVAVGVIKKVEKKD 434          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.254e-71
Identity = 124/185 (67.03%), Postives = 153/185 (82.70%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKK 557
            GTVP+GRVETGVLK GMV+TF P G + E KSVEMHHE + EA PG+NVGFNVK ++VKD+KRGFVAS+SK+DPA +  +F S  I+MNHPG+I  GY PV+DCHT+HIA KF EL+TK D+RSGK  E+ PKFLK GDAG++++ P+KP+ VETF+ Y PLGRFAVRDMRQTVAV VI+ ++KK
Sbjct:  248 GTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEIKAGYTPVIDCHTAHIACKFEELLTKADKRSGKMTEENPKFLKAGDAGLIRLSPSKPLCVETFATYAPLGRFAVRDMRQTVAVGVIQEIKKK 432          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 9.474e-71
Identity = 123/199 (61.81%), Postives = 165/199 (82.91%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAKVTKSAAKK 599
            GTVP+GRVETG+LK GMV+ F PS + +E KSVEMH E L+EA PGDN+GFNVKNV+VK++KRG+VAS++K++PA+  + FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  + +KID+RSGK +E+ PK +K+GD+ +V + P KPMVVETF++YPPLGRFA+RDMRQT+AV +I  +++K+  GA   K+ AKK
Sbjct:  246 GTVPVGRVETGILKAGMVLNFAPSAVVSECKSVEMHKEVLEEARPGDNIGFNVKNVSVKEIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDMRQTIAVGIINQLKRKN-LGAVTAKAPAKK 443          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_ENTHI (Elongation factor 1-alpha OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.020e-70
Identity = 122/183 (66.67%), Postives = 156/183 (85.25%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELE-KEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNV 548
            GTVP+GRVETG+LKPG +V F PSG+++E KS+EMHH AL +A+PGDNVGFNV+N+ VKD+KRG VAS++K+ PA    +FT+QVI+MNHPGQI  GY PVLDCHTSHIA KF EL++KIDRR+GK +E  EP+++KNGD+ +VK++PTKP+ VE F+ +PPLGRFAVRDM+QTVAV V+K V
Sbjct:  246 GTVPVGRVETGILKPGTIVQFAPSGVSSECKSIEMHHTALAQAIPGDNVGFNVRNLTVKDIKRGNVASDAKNQPAVGCEDFTAQVIVMNHPGQIRKGYTPVLDCHTSHIACKFEELLSKIDRRTGKSMEGGEPEYIKNGDSALVKIVPTKPLCVEEFAKFPPLGRFAVRDMKQTVAVGVVKAV 428          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.513e-68
Identity = 121/191 (63.35%), Postives = 151/191 (79.06%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVXVIKNVEKKDPTGAK 575
            GTVP+G++ETG+LKPGM ++F PSG + EVKS+EMHHE LQ A PG N+GFNVKN+AVK LKRG VA NSK DP  EA++FT+QVII+NHPG I  GY+PV+DCHT+HI  +F+EL  KIDRR+GK+LE  P  LK+GDA ++ + P KP  VE F DYPPLGRFA RD++QTVAV V+K+VE K    A+
Sbjct:  263 GTVPVGKIETGILKPGMTISFAPSGFSAEVKSIEMHHEPLQMAFPGFNIGFNVKNIAVKSLKRGNVAGNSKSDPPTEASSFTAQVIILNHPGFIKAGYSPVIDCHTAHITCQFAELQEKIDRRTGKKLEDNPGLLKSGDAAIITLKPIKPFCVERFFDYPPLGRFAARDLKQTVAVGVVKSVEHKAGAAAR 453          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.804e-68
Identity = 114/168 (67.86%), Postives = 147/168 (87.50%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 506
            GTVP+GRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  246 GTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.804e-68
Identity = 114/168 (67.86%), Postives = 147/168 (87.50%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 506
            GTVP+GRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  246 GTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
BLAST of CX294722 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 9.804e-68
Identity = 114/168 (67.86%), Postives = 147/168 (87.50%), Query Frame = 3
Query:    3 GTVPLGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 506
            GTVP+GRVETG+LKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RG+VA +SK++P + AA+FT+QVI++NHPGQI NGY PVLDCHT+HIA KF+E+  K+DRR+GK  E  PK +K+GDA +V ++P+KP+ VE+F ++PPLGRFAVR
Sbjct:  246 GTVPVGRVETGILKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 413          
The following BLAST results are available for this feature:
BLAST of CX294722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
EF1A_CRYPV2.846e-7567.02Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_DICDI2.040e-7366.18Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_TETPY2.255e-7269.35Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A1_EUPCR7.254e-7167.03Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_PLAFK9.474e-7161.81Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_ENTHI8.020e-7066.67Elongation factor 1-alpha OS=Entamoeba histolytica... [more]
EF1A1_XENLA1.513e-6863.35Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR9.804e-6867.86Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE9.804e-6867.86Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI9.804e-6867.86Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionC05055B09SK FlavSen1 Citrus clementina cDNA clone C05055B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294722 ID=CX294722; Name=CX294722; organism=Citrus clementina; type=EST; length=608bp
TTGGAACCGTCCCATTGGGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGT
ATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTGAGGTTAAGTCTGT
TGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGTGACAATGTTG
GCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTTGTT
GCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGCCAACTTCACCTC
ACAGGTCATCATCATGAACCACCCTGGCCAGATTGGAAATGGATATGCCC
CAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTTCTGAGCTC
GTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGAGAAGGAGCCCAA
GTTCTTGAAGAATGGAGATGCTGGAATGGTTAAGATGATTCCCACCAAGC
CCATGGTTGTTGAAACCTTCTCTGACTACCCACCTCTTGGTCGTTTTGCC
GTTAGGGACATGCGTCAGACTGTTGCTGTTGNTGTGATTAAGAATGTTGA
AAAGAAGGATCCAACAGGTGCCAAGGTCACCAAGTCTGCAGCCAAGAAGA
GTGAATCG
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