CX294794

Overview
NameCX294794
Unique NameCX294794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig577 contig Ccv1_Contig577:1..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G2_MOUSE (Casein kinase I isoform gamma-2 OS=Mus musculus GN=Csnk1g2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIEVLC+S+P E  +Y  Y R L F +KPDY YL++LF DLF R G+ FDY +DW
Sbjct:  259 TLKERYQKIGDTKRATPIEVLCESFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGYVFDYEYDW 329          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G2_HUMAN (Casein kinase I isoform gamma-2 OS=Homo sapiens GN=CSNK1G2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.198e-18
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIEVLC+++P E  +Y  Y R L F +KPDY YL++LF DLF R GF FDY +DW
Sbjct:  259 TLKERYQKIGDTKRATPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRSGFVFDYEYDW 329          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_RAT (Casein kinase I isoform gamma-1 OS=Rattus norvegicus GN=Csnk1g1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.177e-18
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K STPIE LC+++P E ++Y  Y R L F +KPDY YL+ LF DLF R+G+ FDY +DW
Sbjct:  258 TLKERYQKIGDTKRSTPIEALCENFPEEMMTYLRYVRRLDFFEKPDYEYLRNLFTDLFERKGYTFDYAYDW 328          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_BOVIN (Casein kinase I isoform gamma-1 OS=Bos taurus GN=CSNK1G1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.455e-18
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIEVLC+++P E  +Y  Y R L F +KPDY YL+ LF DLF R+G+ FDY +DW
Sbjct:  257 TLKERYQKIGDTKRNTPIEVLCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYTFDYAYDW 327          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_DANRE (Casein kinase I isoform gamma-1 OS=Danio rerio GN=csnk1g1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.215e-17
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDWTVLKYP 234
            T K++Y KI + K +TPIEVLC+++P E  +Y  Y R L F +KPDY YL+ LF +LF R+G+ FDY +DW   + P
Sbjct:  257 TLKERYQKIGDTKRNTPIEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRNLFTELFDRKGYAFDYSYDWVGRQIP 333          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_MOUSE (Casein kinase I isoform gamma-1 OS=Mus musculus GN=Csnk1g1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIE LC+++P E  +Y  Y R L F +KPDY YL+ LF DLF R+G+ FDY +DW
Sbjct:  258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYTFDYAYDW 328          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_MACFA (Casein kinase I isoform gamma-1 OS=Macaca fascicularis GN=CSNK1G1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIE LC+++P E  +Y  Y R L F +KPDY YL+ LF DLF ++G+ FDY +DW
Sbjct:  258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAYDW 328          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_HUMAN (Casein kinase I isoform gamma-1 OS=Homo sapiens GN=CSNK1G1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.536e-17
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TPIE LC+++P E  +Y  Y R L F +KPDY YL+ LF DLF ++G+ FDY +DW
Sbjct:  258 TLKERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFEKKGYTFDYAYDW 328          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G3_HUMAN (Casein kinase I isoform gamma-3 OS=Homo sapiens GN=CSNK1G3 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDWTVLKYP 234
            T K++Y KI + K +TPIEVLC+++P E  +Y  Y R L F +KPDY YL++LF DLF R+G+ FDY +DW   + P
Sbjct:  256 TLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRKGYMFDYEYDWIGKQLP 331          
BLAST of CX294794 vs. ExPASy Swiss-Prot
Match: KC1G1_XENLA (Casein kinase I isoform gamma-1 OS=Xenopus laevis GN=csnk1g1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.877e-17
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    4 TKKQKYDKISEKKVSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGFQFDYVFDW 216
            T K++Y KI + K +TP+EVLC+++P E  +Y  Y R L F +KPDY YL+ LF +LF R+G+ FD V+DW
Sbjct:  258 TLKERYQKIGDTKRNTPVEVLCENFPEEMATYLRYVRRLDFFEKPDYDYLRTLFSELFERKGYTFDCVYDW 328          
The following BLAST results are available for this feature:
BLAST of CX294794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KC1G2_MOUSE3.198e-1854.93Casein kinase I isoform gamma-2 OS=Mus musculus GN... [more]
KC1G2_HUMAN3.198e-1854.93Casein kinase I isoform gamma-2 OS=Homo sapiens GN... [more]
KC1G1_RAT4.177e-1853.52Casein kinase I isoform gamma-1 OS=Rattus norvegic... [more]
KC1G1_BOVIN5.455e-1853.52Casein kinase I isoform gamma-1 OS=Bos taurus GN=C... [more]
KC1G1_DANRE1.215e-1749.35Casein kinase I isoform gamma-1 OS=Danio rerio GN=... [more]
KC1G1_MOUSE1.587e-1752.11Casein kinase I isoform gamma-1 OS=Mus musculus GN... [more]
KC1G1_MACFA3.536e-1750.70Casein kinase I isoform gamma-1 OS=Macaca fascicul... [more]
KC1G1_HUMAN3.536e-1750.70Casein kinase I isoform gamma-1 OS=Homo sapiens GN... [more]
KC1G3_HUMAN6.031e-1750.65Casein kinase I isoform gamma-3 OS=Homo sapiens GN... [more]
KC1G1_XENLA7.877e-1750.70Casein kinase I isoform gamma-1 OS=Xenopus laevis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056A06SK PhIFruit1 Citrus clementina cDNA clone C05056A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294794 ID=CX294794; Name=CX294794; organism=Citrus clementina; type=EST; length=606bp
GGCACAAAAAAGCAAAAATATGATAAGATCAGCGAAAAGAAGGTGTCAAC
TCCGATAGAGGTGCTCTGTAAATCATACCCATCTGAGTTTGTATCATACT
TTCATTACTGTCGATCGTTGCGGTTTGAGGACAAACCAGATTATTCATAT
TTAAAGAGGCTTTTCCGCGACTTATTTATTCGAGAAGGTTTTCAGTTTGA
CTATGTATTTGATTGGACTGTATTAAAGTACCCTCAGATTGGTTCCAGCT
CTAAAGGAAGGCATTCCAGTGGGAAGGTAGGCTTAACCCCAGGACCATCT
GCTGAAAGACCAGAAAGGGGTTCAGTTGGGAAGGAGATTAGGGACAAATT
GTCTGGTGCAGTTGAAGCATTTTCAAGAAAAAATGCTGCTGGTACTCCTC
ATCGTGATCATCCCAGACACAAGAGTTCAGATGATGGTCCTTCATCTAAG
CATGTGAACCCTGATTCTGAAAAAGGACGAAGCTTTTCCCGGTATGGAAG
CACTTCAAGAAAAGCTGTAATCGCAAGCACTAAACCTGGTTCATCTGGTG
AATTCAGTGAGTGTCGCTCTAGCCGACTAGTCTCAAGCAGTGGCCGCTTG
TCTACC
back to top