CX294799

Overview
NameCX294799
Unique NameCX294799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  260 VSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN-----IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            V+  +++       ++FDE+P+ NV+S + +I  +     Y+EA+ LF  M L       +RP+EFT  +V+ +   L  L  GK +HA+  K  ++ ++ +G+A++D+Y K  S+E
Sbjct:  135 VNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLE 251          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP268_ARATH (Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 35/104 (33.65%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  293 SVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLN--IRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +  QVFD++P  ++VS T+II R+   ++ +EA+ LFS M +++  + P       V+ +     ++  G+ LHA+A K  L S+V+VGS++LD+Y ++  I++
Sbjct:   58 AARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDK 161          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 33/119 (27.73%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  242 AIRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            A  T  +S  S S + +  H++FDE+PD +VV+ T +   +     + EAI LF +M+ + ++P  +    V+ +   + DL+ G+ +  +  ++ +Q N FV + +++LY K   +E+
Sbjct:  147 AAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEK 265          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 33/108 (30.56%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  278 SDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQ-SNVFVGSAILDLYIKLSSIEE 598
            SD     H+VFDE+PD +V+S  +++  + +   ++E I LF  +   ++ P+EF+F + + +   L    LG  +H+   K+GL+  NV VG+ ++D+Y K   +++
Sbjct:  103 SDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMYGKCGFMDD 210          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 38/132 (28.79%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  209 QKASVQKLETPA----IRTDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSI 592
            +K   Q ++ P+    + T  +   ++  +  S H+VF+++   NVV  T++I  + K    EE + LF+RM   N+  +E+T+G++I + T L  L+ GK  H    K G++ +  + +++LD+Y+K   I
Sbjct:  162 KKIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDI 293          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP121_ARATH (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 33/111 (29.73%), Postives = 63/111 (56.76%), Query Frame = 2
Query:  266 CGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            CGS         QV+D +P+L+ VS +++I  +++    ++   LF  M++       F   S++ ++   ++ +LG Q+HA+ TK+GL +   VGS++L +Y K  SI++
Sbjct:  599 CGS----LKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDD 705          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 32/102 (31.37%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  290 SSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIE 595
            +   +VFD +P+ ++VS  TI+  +++      A+ +   M   N++PS  T  SV+P+ +AL  +++GK++H +A + G  S V + +A++D+Y K  S+E
Sbjct:  187 NEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 35/99 (35.35%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  302 QVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIKLSSIEE 598
            +VFD+    N+   TTI+  + +   +EEA+ LFS+M    + P+E+TF  ++ S   L  L  G  LH    K G +++V VG+A++++Y K  SIE+
Sbjct:  293 RVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIED 391          
BLAST of CX294799 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 30/110 (27.27%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  251 TDSVSCGSESDKFSSVHQVFDEVPDLNVVSATTIIGRFAKQHHYEEAIYLFSRMLLLNIRPSEFTFGSVIPSSTALEDLNLGKQLHAWATKVGLQSNVFVGSAILDLYIK 580
            T  +   S     +   QVFD++P   +     II  +++ +H+++A+ ++S M L  + P  FTF  ++ + + L  L +G+ +HA   ++G  ++VFV + ++ LY K
Sbjct:   57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAK 166          
The following BLAST results are available for this feature:
BLAST of CX294799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PP295_ARATH2.804e-1130.77Pentatricopeptide repeat-containing protein At3g62... [more]
PP268_ARATH2.804e-1133.65Putative pentatricopeptide repeat-containing prote... [more]
PP219_ARATH3.662e-1127.73Putative pentatricopeptide repeat-containing prote... [more]
PP423_ARATH4.782e-1130.56Putative pentatricopeptide repeat-containing prote... [more]
PP146_ARATH4.782e-1128.79Pentatricopeptide repeat-containing protein At2g03... [more]
PP121_ARATH4.782e-1129.73Pentatricopeptide repeat-containing protein At1g74... [more]
PPR32_ARATH6.246e-1131.37Pentatricopeptide repeat-containing protein At1g11... [more]
PP406_ARATH6.246e-1135.35Pentatricopeptide repeat-containing protein At5g39... [more]
PP224_ARATH6.246e-1127.27Pentatricopeptide repeat-containing protein At3g12... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056A12SK PhIFruit1 Citrus clementina cDNA clone C05056A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294799 ID=CX294799; Name=CX294799; organism=Citrus clementina; type=EST; length=600bp
TGTACTACTAAAATCAGCATGTGAATGTTACATCAATCATGCATTAATGG
GATAAAGCGAACCTTTCATGGTGTGATTGGGAGTTCAAAATCAAGATAAC
CCGCCAAAATCACACATGATCCAACTATTATGTATATGCAGATCATCTCT
CTCCCTTAACAAGCTCAGCAAACTGCACTCTTTAGCCCCTAATTACCTGA
TTGAAACCCAAAAAGCCAGCGTACAAAAACTCGAAACCCCAGCTATTCGA
ACGGACAGTGTTAGCTGCGGTAGCGAATCAGACAAATTTTCGAGTGTTCA
CCAAGTGTTCGATGAAGTGCCTGACTTAAATGTGGTTTCCGCCACAACCA
TAATTGGCCGTTTTGCTAAGCAGCACCACTATGAAGAAGCCATATATCTC
TTTTCAAGAATGCTTCTGTTGAATATCAGACCCAGCGAGTTCACTTTTGG
ATCTGTAATTCCCTCATCAACTGCTTTAGAGGACCTTAATTTGGGCAAGC
AACTACATGCCTGGGCAACAAAGGTGGGACTTCAGTCGAATGTATTTGTG
GGGAGCGCTATTTTGGATCTTTATATCAAGCTGAGTTCAATCGAGGAAGC
back to top