CX294803

Overview
NameCX294803
Unique NameCX294803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig725 contig Ccv1_Contig725:247..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A_SPOFR (Eukaryotic translation initiation factor 5A OS=Spodoptera frugiperda GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.894e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   50 TGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A_SPOEX (Eukaryotic translation initiation factor 5A OS=Spodoptera exigua GN=eIF-5A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.894e-30
Identity = 61/105 (58.10%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++  F+SGK+L+ +V  + GEE + A+K
Sbjct:   50 TGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLRSDFDSGKELLCTVLKSCGEECVIAVK 153          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_SCHPO (Eukaryotic translation initiation factor 5A-2 OS=Schizosaccharomyces pombe GN=tif51b PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.216e-28
Identity = 61/106 (57.55%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  230 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 547
            TGKHGHAK H V +DIFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GFE GKDL+++V  AMGEE   A +D
Sbjct:   50 TGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFEEGKDLIITVVSAMGEEIALACRD 153          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A1_SCHPO (Eukaryotic translation initiation factor 5A-1 OS=Schizosaccharomyces pombe GN=tif51a PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.537e-28
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  230 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 547
            TGKHGHAK H V +DIFNG+K ED+ PS+HN DVP V R +YQL++I +DG+++L+T +G TKDD+RLP  E L ++I++GF+ G+DL+++V  AMGEE   A +D
Sbjct:   50 TGKHGHAKVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGE-LGNEIEEGFDEGRDLIITVVSAMGEETALACRD 153          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_PONAB (Eukaryotic translation initiation factor 5A-2 OS=Pongo abelii GN=EIF5A2 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   48 TGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_MOUSE (Eukaryotic translation initiation factor 5A-2 OS=Mus musculus GN=Eif5a2 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   48 TGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_HUMAN (Eukaryotic translation initiation factor 5A-2 OS=Homo sapiens GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.880e-28
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE G  ++DL+LP  E L  +I+  + +G+D+ VSV CAM EE   A+K
Sbjct:   48 TGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICI-QDGYLSLLTETGEVREDLKLPEGE-LGKEIEGKYNAGEDVQVSVMCAMSEEYAVAIK 150          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.671e-27
Identity = 60/105 (57.14%), Postives = 80/105 (76.19%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIF+ KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q++  F+SGKDL+ +V  A GEE + A+K
Sbjct:   49 TGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A_CANAL (Eukaryotic translation initiation factor 5A OS=Candida albicans GN=ANB1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.671e-27
Identity = 57/106 (53.77%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  230 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 547
            TGKHGHAK H V IDIF GKKLED+ PS+HN +VP+V+R ++QL+DI +DG++SL+T +G+TKDD+++P  E L  +++  F+ GKDL+V++  AMGEE   + K+
Sbjct:   48 TGKHGHAKVHLVAIDIFTGKKLEDLSPSTHNMEVPNVSRQEFQLLDI-DDGYLSLMTADGDTKDDVKVPEGE-LGDKLQSEFDEGKDLIVTIISAMGEEAAISYKE 151          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.941e-26
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK H VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F + +D+ +SV  AM EE   A+K
Sbjct:   48 TGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
The following BLAST results are available for this feature:
BLAST of CX294803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_SPOFR2.894e-3058.10Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A_SPOEX2.894e-3058.10Eukaryotic translation initiation factor 5A OS=Spo... [more]
IF5A2_SCHPO1.216e-2857.55Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_SCHPO3.537e-2855.66Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_PONAB7.880e-2859.05Eukaryotic translation initiation factor 5A-2 OS=P... [more]
IF5A2_MOUSE7.880e-2859.05Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A2_HUMAN7.880e-2859.05Eukaryotic translation initiation factor 5A-2 OS=H... [more]
IF5A_DROME6.671e-2757.14Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A_CANAL6.671e-2753.77Eukaryotic translation initiation factor 5A OS=Can... [more]
IF5A2_CHICK1.941e-2657.14Eukaryotic translation initiation factor 5A-2 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionC05056B06SK PhIFruit1 Citrus clementina cDNA clone C05056B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294803 ID=CX294803; Name=CX294803; organism=Citrus clementina; type=EST; length=548bp
TTTTTTTTTGCACACCGAGAACAACCATGTTTCAACTTTCAAGCAATCAA
ACAGAATAAAAATATTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGACATTCATCTTGAAACCGGACACCAGTAAGC
TACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGATC
AAGCAAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACAAAGTGACACTTAGCATGACCGTGCTTTCCAGTC
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