CX294803

Overview
NameCX294803
Unique NameCX294803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig725 contig Ccv1_Contig725:247..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A_DICDI (Eukaryotic translation initiation factor 5A OS=Dictyostelium discoideum GN=eif5a PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 50/105 (47.62%), Postives = 74/105 (70.48%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 547
            TGKHGHAK +   IDIF GKK E+I PS+HN DVP+V+R +Y ++D+ +DG++SLL   G  K+DL LP D+ +  +I    + GK+ +VSV  A+G+E + ++K
Sbjct:   53 TGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDV-QDGYLSLLDAGGEVKEDLALPEDD-IGKEITQMLKEGKEPLVSVISALGKEGVVSVK 155          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A2_CAEEL (Eukaryotic translation initiation factor 5A-2 OS=Caenorhabditis elegans GN=iff-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.048e-20
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = -2
Query:  245 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQI 547
            TGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I +DG+ SL+  E+   KDDL+LP D  L  QI+D +E  +  ++V V  A+GEE I
Sbjct:   52 TGKHGHAKVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLP-DTELGQQIRDAYEKDEGSVLVQVVSAIGEEAI 152          
BLAST of CX294803 vs. ExPASy Swiss-Prot
Match: IF5A1_CAEEL (Eukaryotic translation initiation factor 5A-1 OS=Caenorhabditis elegans GN=iff-1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.945e-18
Identity = 55/107 (51.40%), Postives = 70/107 (65.42%), Query Frame = -2
Query:  233 TGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL-TENGNTKDDLRLPTDENLLSQIKDGFESGK-DLVVSVQCAMGEEQINALK 547
            TGKHGHAK H V IDIF  KKLEDI PS+HN DVP V R +Y L+ I EDGF SL+  E+   KDDL++P + +L + I++  E  +  ++V V  A GEE I   K
Sbjct:   52 TGKHGHAKVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMP-EGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYK 156          
The following BLAST results are available for this feature:
BLAST of CX294803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A_DICDI4.188e-2147.62Eukaryotic translation initiation factor 5A OS=Dic... [more]
IF5A2_CAEEL6.048e-2054.37Eukaryotic translation initiation factor 5A-2 OS=C... [more]
IF5A1_CAEEL1.945e-1851.40Eukaryotic translation initiation factor 5A-1 OS=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056B06SK PhIFruit1 Citrus clementina cDNA clone C05056B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294803 ID=CX294803; Name=CX294803; organism=Citrus clementina; type=EST; length=548bp
TTTTTTTTTGCACACCGAGAACAACCATGTTTCAACTTTCAAGCAATCAA
ACAGAATAAAAATATTGTCGATAGAAAACAATTAATAATATGGTAAGAGT
CATTTTATATGAAATGATGACATTCATCTTGAAACCGGACACCAGTAAGC
TACACTACTATCCACCTTCCCACAGCTTTCAGCAATCTGCATTCTCGATC
AAGCAAAAAGTCTTTTACTTGGGGCCAATGTCCTTCAGGGCATTGATCTG
CTCCTCTCCCATAGCACACTGAACTGAGACAACCAGATCTTTCCCACTCT
CAAATCCATCCTTGATCTGTGAAAGCAGATTTTCATCAGTTGGAAGTCTC
AGGTCATCCTTGGTATTGCCATTCTCAGTCAGCAGGCTAACAAATCCATC
CTCAGAGATATCAATCAGCTGGTAGTCAGTGCGAGTGACATGAGGAACAT
CACAGTTGTGGGAAGAGGGAACAATATCCTCAAGCTTCTTGCCATTGAAG
ATGTCAATTCCTACAAAGTGACACTTAGCATGACCGTGCTTTCCAGTC
back to top