CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NATTJ (50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 66/145 (45.52%), Postives = 101/145 (69.66%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PIE+P +V I++   ++ VKGP GELS V  + + ++ E+  L V++  ++     +HGL R+L  NMV GV+ GFE+ L++VGVGYRA ++G+ LVL++G+SHPV +  P+G+ + V +N +I V G DK  +GQ AA
Sbjct:    2 SRIGKKPIEIPDSVDISINNNEVTVKGPKGELSQVVDQSIILEEEEGQLLVKRPTDSNHHKSLHGLSRSLIANMVEGVTNGFERHLEIVGVGYRAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEVVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRASB (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33
Identity = 72/145 (49.66%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ VPS VT T+ GQ +K+KGP G+L  +   +V V  E+  +RV    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T ITV+G D   +GQ AA
Sbjct:    2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFIVHDDVDVKFENGQVRVAPRSETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITVTGIDPQRVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNP6 (50S ribosomal protein L6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ V++ + G+ + VKGP GELS   P  V V +ED  + V +  E+R A Q HGL RTL  N+V GV  GF+K+L+++GVGYRA ++G  L+L++G+S+PV++  P+GI   VE NT + VSG  K  +G  AA
Sbjct:    2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNE7 (50S ribosomal protein L6 OS=Synechococcus elongatus (strain PCC 7942) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ V++ + G+ + VKGP GELS   P  V V +ED  + V +  E+R A Q HGL RTL  N+V GV  GF+K+L+++GVGYRA ++G  L+L++G+S+PV++  P+GI   VE NT + VSG  K  +G  AA
Sbjct:    2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROMA (50S ribosomal protein L6 OS=Prochlorococcus marinus GN=rplF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI VP  V +TL G  + VKGP GEL+   P  V +D+ D  + V    E R++ + HGL RTL  NM+ GV+ G+ K+L++VGVG RA ++G+ LV+S G+SHPV +  P+GI   VE NT + VSG DK  +G  AA
Sbjct:    2 SRIGKKPIPVPEKVAVTLDGLLVTVKGPKGELTRTLPEGVTIDQTDGLIIVSADSEKRKSRERHGLSRTLVANMIEGVNNGYSKQLEIVGVGSRAQVKGKTLVVSAGYSHPVEVIPPEGITFKVENNTNVLVSGIDKELVGNEAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROM5 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK P+++P  V++ + G  + VKGP GEL  + P  V   ++++ + V  +   R + + HGL RTL  NMV GV+ G+ KKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI   VE NT +TVSG DK  +G  AA
Sbjct:    2 SRIGKSPVQIPDKVSVDINGLTITVKGPKGELKRLMPEGVDFVQKENQIVVTPSTTKRYSRERHGLCRTLISNMVQGVTDGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MICAN (50S ribosomal protein L6 OS=Microcystis aeruginosa (strain NIES-843) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ VT+ + G  + VKGP G L    P  V ++++   L V +  ++R A + HGL RTL  NMV GV+ GF+K+L + GVGYRA  +G  LVL++G+S PV M +PDG+ V VE +T++ VSG DK A+G  AA
Sbjct:    2 SRIGKRPIPIPNKVTVDIDGATVTVKGPKGTLQRTLPTAVAINKDGETLLVTRQDDSRTARERHGLCRTLVANMVEGVATGFQKRLDIQGVGYRAQAQGSKLVLNVGYSKPVEMEMPDGVSVAVENSTQVIVSGIDKEAVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRASO (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain ORS278) GN=rplF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ VPS VT T+ GQ +K+KGP G+L  +   +V+V  E+  ++V    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T IT++G D   +GQ AA
Sbjct:    2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFLVHDDVEVKFENGQVKVAPRAETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITITGIDPQRVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOE4 (50S ribosomal protein L6 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIGK P+ VP+ V +T+ GQD+ VKGP G L+L     + +++ ED  L V +  + RR+  +HGL RTL  N++ GV++G+ KK+++ GVGYR AL+G+ L  +LGFSHPV +  P+GI   VE  TR +VSG DK  +GQ +A+
Sbjct:    2 SRIGKIPVTVPAGVDVTISGQDVTVKGPKGTLALTISEPIAIEKAEDGSLSVTRPDDERRSRALHGLSRTLVANIITGVTEGYTKKMEIHGVGYRVALKGKDLEFALGFSHPVPIEAPEGITFVVESPTRFSVSGIDKQKVGQISAN 148          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_OLICO (50S ribosomal protein L6 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ + S VT  + GQ +KVKGP G  S     +V V+ +D+ +RV    ET+RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAAL+G+ L LSLG+SH V   +P+GI + V + T ITV+G D   +GQ AA
Sbjct:    2 SRVGKRPVAIASGVTANVEGQTVKVKGPKGTRSFTVHDDVSVELKDNVIRVAPRFETKRAQSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKNLQLSLGYSHDVVYPVPEGITITVPKPTEITVAGIDSQRVGQVAA 146          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_NATTJ4.779e-3345.5250S ribosomal protein L6 OS=Natranaerobius thermop... [more]
RL6_BRASB4.779e-3349.6650S ribosomal protein L6 OS=Bradyrhizobium sp. (st... [more]
RL6_SYNP66.241e-3347.5950S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_SYNE76.241e-3347.5950S ribosomal protein L6 OS=Synechococcus elongatu... [more]
RL6_PROMA6.241e-3348.2850S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_PROM56.241e-3347.5950S ribosomal protein L6 OS=Prochlorococcus marinu... [more]
RL6_MICAN6.241e-3347.5950S ribosomal protein L6 OS=Microcystis aeruginosa... [more]
RL6_BRASO8.151e-3348.2850S ribosomal protein L6 OS=Bradyrhizobium sp. (st... [more]
RL6_RHOE41.065e-3246.9450S ribosomal protein L6 OS=Rhodococcus erythropol... [more]
RL6_OLICO1.065e-3248.2850S ribosomal protein L6 OS=Oligotropha carboxidov... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
back to top