CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_NATTJ (50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33 Identity = 66/145 (45.52%), Postives = 101/145 (69.66%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PIE+P +V I++ ++ VKGP GELS V + + ++ E+ L V++ ++ +HGL R+L NMV GV+ GFE+ L++VGVGYRA ++G+ LVL++G+SHPV + P+G+ + V +N +I V G DK +GQ AA Sbjct: 2 SRIGKKPIEIPDSVDISINNNEVTVKGPKGELSQVVDQSIILEEEEGQLLVKRPTDSNHHKSLHGLSRSLIANMVEGVTNGFERHLEIVGVGYRAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEVVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRASB (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplF PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 4.779e-33 Identity = 72/145 (49.66%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ VPS VT T+ GQ +K+KGP G+L + +V V E+ +RV ET+RA ++G R N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V IP+GI + V + T ITV+G D +GQ AA Sbjct: 2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFIVHDDVDVKFENGQVRVAPRSETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITVTGIDPQRVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNP6 (50S ribosomal protein L6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplF PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33 Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ V++ + G+ + VKGP GELS P V V +ED + V + E+R A Q HGL RTL N+V GV GF+K+L+++GVGYRA ++G L+L++G+S+PV++ P+GI VE NT + VSG K +G AA Sbjct: 2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNE7 (50S ribosomal protein L6 OS=Synechococcus elongatus (strain PCC 7942) GN=rplF PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33 Identity = 69/145 (47.59%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ V++ + G+ + VKGP GELS P V V +ED + V + E+R A Q HGL RTL N+V GV GF+K+L+++GVGYRA ++G L+L++G+S+PV++ P+GI VE NT + VSG K +G AA Sbjct: 2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLARQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGIQFVVENNTNVVVSGISKEVVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROMA (50S ribosomal protein L6 OS=Prochlorococcus marinus GN=rplF PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33 Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI VP V +TL G + VKGP GEL+ P V +D+ D + V E R++ + HGL RTL NM+ GV+ G+ K+L++VGVG RA ++G+ LV+S G+SHPV + P+GI VE NT + VSG DK +G AA Sbjct: 2 SRIGKKPIPVPEKVAVTLDGLLVTVKGPKGELTRTLPEGVTIDQTDGLIIVSADSEKRKSRERHGLSRTLVANMIEGVNNGYSKQLEIVGVGSRAQVKGKTLVVSAGYSHPVEVIPPEGITFKVENNTNVLVSGIDKELVGNEAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PROM5 (50S ribosomal protein L6 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplF PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33 Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK P+++P V++ + G + VKGP GEL + P V ++++ + V + R + + HGL RTL NMV GV+ G+ KKL++VGVG RA ++G+ LV+S G+SHPV MT PDGI VE NT +TVSG DK +G AA Sbjct: 2 SRIGKSPVQIPDKVSVDINGLTITVKGPKGELKRLMPEGVDFVQKENQIVVTPSTTKRYSRERHGLCRTLISNMVQGVTDGYSKKLEIVGVGSRAQVKGKTLVVSAGYSHPVEMTPPDGITYKVESNTNVTVSGIDKEIVGNEAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MICAN (50S ribosomal protein L6 OS=Microcystis aeruginosa (strain NIES-843) GN=rplF PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33 Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ VT+ + G + VKGP G L P V ++++ L V + ++R A + HGL RTL NMV GV+ GF+K+L + GVGYRA +G LVL++G+S PV M +PDG+ V VE +T++ VSG DK A+G AA Sbjct: 2 SRIGKRPIPIPNKVTVDIDGATVTVKGPKGTLQRTLPTAVAINKDGETLLVTRQDDSRTARERHGLCRTLVANMVEGVATGFQKRLDIQGVGYRAQAQGSKLVLNVGYSKPVEMEMPDGVSVAVENSTQVIVSGIDKEAVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRASO (50S ribosomal protein L6 OS=Bradyrhizobium sp. (strain ORS278) GN=rplF PE=3 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 8.151e-33 Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ VPS VT T+ GQ +K+KGP G+L + +V+V E+ ++V ET+RA ++G R N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V IP+GI + V + T IT++G D +GQ AA Sbjct: 2 SRIGKKPVTVPSGVTATVDGQTVKMKGPKGQLQFLVHDDVEVKFENGQVKVAPRAETKRARSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKNLQLALGYSHDVVYQIPEGITIAVPKPTEITITGIDPQRVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOE4 (50S ribosomal protein L6 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplF PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32 Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIGK P+ VP+ V +T+ GQD+ VKGP G L+L + +++ ED L V + + RR+ +HGL RTL N++ GV++G+ KK+++ GVGYR AL+G+ L +LGFSHPV + P+GI VE TR +VSG DK +GQ +A+ Sbjct: 2 SRIGKIPVTVPAGVDVTISGQDVTVKGPKGTLALTISEPIAIEKAEDGSLSVTRPDDERRSRALHGLSRTLVANIITGVTEGYTKKMEIHGVGYRVALKGKDLEFALGFSHPVPIEAPEGITFVVESPTRFSVSGIDKQKVGQISAN 148
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_OLICO (50S ribosomal protein L6 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplF PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32 Identity = 70/145 (48.28%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ + S VT + GQ +KVKGP G S +V V+ +D+ +RV ET+RA ++G R N+V GV+KGFEKKL++ GVGYRAAL+G+ L LSLG+SH V +P+GI + V + T ITV+G D +GQ AA Sbjct: 2 SRVGKRPVAIASGVTANVEGQTVKVKGPKGTRSFTVHDDVSVELKDNVIRVAPRFETKRAQSLYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKNLQLSLGYSHDVVYPVPEGITITVPKPTEITVAGIDSQRVGQVAA 146 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |