CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPS (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPP (50S ribosomal protein L6 OS=Yersinia pestis (strain Pestoides F) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPN (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPG (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPE (50S ribosomal protein L6 OS=Yersinia pestis GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPB (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPA (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERP3 (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+ K P+ +P+ V + L GQ + +KG  GEL+      V+V +E++ L               G  R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV   +P GI       T I + G DK  IGQ AA
Sbjct:    2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MYCCT (50S ribosomal protein L6 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 56/147 (38.10%), Postives = 92/147 (62.59%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIG + +++P+ V + +   +L  + G  G LS  +   +K++ E++ L  ++  E +   Q+HG   +L   M+ GVS+GF+K+LQ+ GVGY+AA+ G  L LSLG+SHPV   IPDG+ +   + T + ++G DK  +GQ AA+
Sbjct:    2 SRIGNRLLQIPNGVEVKIAENNLVTITGSKGTLSKQFSPLIKIEVEENKLITKRLNEQKHTKQLHGTTNSLLQGMLTGVSEGFKKELQITGVGYKAAVNGSKLNLSLGYSHPVEFEIPDGVVIQAVKPTELAITGIDKQLVGQVAAN 148          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_FLAPJ (50S ribosomal protein L6 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplF PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25
Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNV----EENTRITVSGYDKSAIGQFAA 619
            SRIGK PI +P+ VT+ +    + VKG LG+L+  Y   V V  E+  + V +  ++++    HGL+R L +NMV GVS GF K+L++VGVGYRA+ +GQ L L+LGFSH + + I   + +       +N  + ++ +DK  +GQ AA
Sbjct:    2 SRIGKNPIAIPAGVTVEVNNSIVTVKGKLGQLTQNYTNNVTVKVEEGQVIVERAADSKQERAQHGLYRALINNMVAGVSTGFTKELELVGVGYRASNQGQKLDLALGFSHNIVLEIASEVTLETISEKGKNPIVKLTSFDKQLLGQVAA 150          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_YERPS1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pseudotubercu... [more]
RL6_YERPP1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pestis (strai... [more]
RL6_YERPN1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERPG1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERPE1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pestis GN=rpl... [more]
RL6_YERPB1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pseudotubercu... [more]
RL6_YERPA1.646e-2542.7650S ribosomal protein L6 OS=Yersinia pestis bv. An... [more]
RL6_YERP31.646e-2542.7650S ribosomal protein L6 OS=Yersinia pseudotubercu... [more]
RL6_MYCCT1.646e-2538.1050S ribosomal protein L6 OS=Mycoplasma capricolum ... [more]
RL6_FLAPJ1.646e-2540.2750S ribosomal protein L6 OS=Flavobacterium psychro... [more]

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Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
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