CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPS (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPP (50S ribosomal protein L6 OS=Yersinia pestis (strain Pestoides F) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPN (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPG (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPE (50S ribosomal protein L6 OS=Yersinia pestis GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPB (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERPA (50S ribosomal protein L6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_YERP3 (50S ribosomal protein L6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 62/145 (42.76%), Postives = 86/145 (59.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+ K P+ +P+ V + L GQ + +KG GEL+ V+V +E++ L G R L ++MV+GV++GF KKLQ+VGVGYRAA++G V+ L+LGFSHPV +P GI T I + G DK IGQ AA Sbjct: 2 SRVAKAPVVIPAGVEVKLNGQVISIKGKNGELTRTVHSAVEVKQEENTLTFAPREGAVDGWAQAGTTRALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLALGFSHPVDHELPAGITAECPTQTEIVLKGADKQVIGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_MYCCT (50S ribosomal protein L6 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 56/147 (38.10%), Postives = 92/147 (62.59%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDL-KVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIG + +++P+ V + + +L + G G LS + +K++ E++ L ++ E + Q+HG +L M+ GVS+GF+K+LQ+ GVGY+AA+ G L LSLG+SHPV IPDG+ + + T + ++G DK +GQ AA+ Sbjct: 2 SRIGNRLLQIPNGVEVKIAENNLVTITGSKGTLSKQFSPLIKIEVEENKLITKRLNEQKHTKQLHGTTNSLLQGMLTGVSEGFKKELQITGVGYKAAVNGSKLNLSLGYSHPVEFEIPDGVVIQAVKPTELAITGIDKQLVGQVAAN 148
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_FLAPJ (50S ribosomal protein L6 OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rplF PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.646e-25 Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNV----EENTRITVSGYDKSAIGQFAA 619 SRIGK PI +P+ VT+ + + VKG LG+L+ Y V V E+ + V + ++++ HGL+R L +NMV GVS GF K+L++VGVGYRA+ +GQ L L+LGFSH + + I + + +N + ++ +DK +GQ AA Sbjct: 2 SRIGKNPIAIPAGVTVEVNNSIVTVKGKLGQLTQNYTNNVTVKVEEGQVIVERAADSKQERAQHGLYRALINNMVAGVSTGFTKELELVGVGYRASNQGQKLDLALGFSHNIVLEIASEVTLETISEKGKNPIVKLTSFDKQLLGQVAA 150 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |