CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISIN (50S ribosomal protein L6 OS=Listeria innocua GN=rplF PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32 Identity = 64/146 (43.84%), Postives = 97/146 (66.44%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIGK+ I +P+ VT+TL G VKGP GEL + E+ ++ E + + V + + + +HG R + +NMVVGVS+G+EKKL+++GVGYRA +G LVL++G+SHPV P G+ + V NT++ V GY+K +G+ AA+ Sbjct: 2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAAN 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUCR (50S ribosomal protein L6 OS=Caulobacter crescentus GN=rplF PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32 Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+ + +PS V +TL GQ + VKGP G+LS EV+V +E + L + V+T+RA M GL RTL NMV GV+ GFE+ L++VGVGYRAA++G L L LGFSH V + P G+ V + T I ++G DK A+G+ AA Sbjct: 2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUCN (50S ribosomal protein L6 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplF PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32 Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+ + +PS V +TL GQ + VKGP G+LS EV+V +E + L + V+T+RA M GL RTL NMV GV+ GFE+ L++VGVGYRAA++G L L LGFSH V + P G+ V + T I ++G DK A+G+ AA Sbjct: 2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPT (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT T+ GQ +K+KGP G+L V +V V ED ++V ET RA ++G R N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V IP+GI + V + T I V G D +GQ AA Sbjct: 2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPS (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT T+ GQ +K+KGP G+L V +V V ED ++V ET RA ++G R N+V GV+KGFEKKL++ GVGYRA+L+G+ L L+LG+SH V IP+GI + V + T I V G D +GQ AA Sbjct: 2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVDGVTKGFEKKLEITGVGYRASLQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPA (50S ribosomal protein L6 OS=Rhodopseudomonas palustris GN=rplF PE=1 SV=3) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT T+ GQ +K+KGP G+L V +V V ED ++V ET RA ++G R N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V IP+GI + V + T I V G D +GQ AA Sbjct: 2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOP5 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT ++ GQ +KVKGP G+L V +V V E+ + V+ ET RA ++G R N+V GV+KGFEKKL++ GVGYRA L+G+ L L+LG+SH V TIP+GI + V + T I + G D +GQ AA Sbjct: 2 SRVGKKPVTVPSGVTASVEGQTVKVKGPKGQLQFVVHDDVDVKLENGEVTVKPRYETNRARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRATLQGKNLQLALGYSHDVVYTIPEGIAITVPKPTEINIVGIDSQVVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PHEZH (50S ribosomal protein L6 OS=Phenylobacterium zucineum (strain HLK1) GN=rplF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+ + VPS VT+T+ GQ + VKGP G+L+ E++V +E + + + K E+ RA M GL RTL +NMVVGV++G+E+ L++VGVGYRAA++GQ L + LGFSH V + P GI + T I +SG DK +G+ AA Sbjct: 2 SRIGKKAVAVPSGVTVTIDGQTVTVKGPKGQLAWTVAEEIEVRQEGAEILLSKRDESTRAQAMWGLSRTLVNNMVVGVTQGYEQTLELVGVGYRAAMKGQALSMQLGFSHDVDVAPPAGITFATPKQTEIKISGIDKQLVGETAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BARHE (50S ribosomal protein L6 OS=Bartonella henselae GN=rplF PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32 Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI VPS VT T+ GQ +K KGP GELS + EV V E+SF+ V +++ A G+ R++ +N+ GV GFEK+L++ GVGYRAAL+G+ + LSLGFSH V +P G+ V++ + T I VSG DK +GQ AA Sbjct: 2 SRIGKKPISVPSGVTATVEGQLVKAKGPKGELSYLVNDEVLVKLEESFISVSPRDQSKDARSKWGMSRSMIENIFCGVKDGFEKRLEINGVGYRAALQGKDIQLSLGFSHDVIYKVPSGVTVSIPKPTEIVVSGIDKQQVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOP2 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplF PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32 Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT ++ GQ +K+KGP G+L V +V V ED ++V ET RA ++G R N+V GV+KGFEKKL++ GVGYRAAL+G+ L L+LG+SH V IP+GI + V + T I V G D +GQ AA Sbjct: 2 SRVGKKPVTVPSGVTASVEGQTVKMKGPKGQLHFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAA 146 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |