CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_LISIN (50S ribosomal protein L6 OS=Listeria innocua GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 64/146 (43.84%), Postives = 97/146 (66.44%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIGK+ I +P+ VT+TL G    VKGP GEL   +  E+ ++ E + + V +  + +    +HG  R + +NMVVGVS+G+EKKL+++GVGYRA  +G  LVL++G+SHPV    P G+ + V  NT++ V GY+K  +G+ AA+
Sbjct:    2 SRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITINIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVEIEVPANTQVIVKGYNKEHVGELAAN 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUCR (50S ribosomal protein L6 OS=Caulobacter crescentus GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+ + +PS V +TL GQ + VKGP G+LS     EV+V +E + L +   V+T+RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L L LGFSH V +  P G+   V + T I ++G DK A+G+ AA
Sbjct:    2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_CAUCN (50S ribosomal protein L6 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplF PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.816e-32
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+ + +PS V +TL GQ + VKGP G+LS     EV+V +E + L +   V+T+RA  M GL RTL  NMV GV+ GFE+ L++VGVGYRAA++G  L L LGFSH V +  P G+   V + T I ++G DK A+G+ AA
Sbjct:    2 SRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKRAKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAGVTFAVPKQTEIKIAGIDKQAVGEIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPT (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPS (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRA+L+G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVDGVTKGFEKKLEITGVGYRASLQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPA (50S ribosomal protein L6 OS=Rhodopseudomonas palustris GN=rplF PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT T+ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAA++G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA
Sbjct:    2 SRVGKKPVTVPSGVTATVEGQTVKMKGPKGQLQFVVHDDVDVKFEDGAVKVAPRHETNRARALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAAMQGKKLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQKVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOP5 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT ++ GQ +KVKGP G+L  V   +V V  E+  + V+   ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRA L+G+ L L+LG+SH V  TIP+GI + V + T I + G D   +GQ AA
Sbjct:    2 SRVGKKPVTVPSGVTASVEGQTVKVKGPKGQLQFVVHDDVDVKLENGEVTVKPRYETNRARALYGTARAQVANLVEGVTKGFEKKLEITGVGYRATLQGKNLQLALGYSHDVVYTIPEGIAITVPKPTEINIVGIDSQVVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_PHEZH (50S ribosomal protein L6 OS=Phenylobacterium zucineum (strain HLK1) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+ + VPS VT+T+ GQ + VKGP G+L+     E++V +E + + + K  E+ RA  M GL RTL +NMVVGV++G+E+ L++VGVGYRAA++GQ L + LGFSH V +  P GI     + T I +SG DK  +G+ AA
Sbjct:    2 SRIGKKAVAVPSGVTVTIDGQTVTVKGPKGQLAWTVAEEIEVRQEGAEILLSKRDESTRAQAMWGLSRTLVNNMVVGVTQGYEQTLELVGVGYRAAMKGQALSMQLGFSHDVDVAPPAGITFATPKQTEIKISGIDKQLVGETAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BARHE (50S ribosomal protein L6 OS=Bartonella henselae GN=rplF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI VPS VT T+ GQ +K KGP GELS +   EV V  E+SF+ V    +++ A    G+ R++ +N+  GV  GFEK+L++ GVGYRAAL+G+ + LSLGFSH V   +P G+ V++ + T I VSG DK  +GQ AA
Sbjct:    2 SRIGKKPISVPSGVTATVEGQLVKAKGPKGELSYLVNDEVLVKLEESFISVSPRDQSKDARSKWGMSRSMIENIFCGVKDGFEKRLEINGVGYRAALQGKDIQLSLGFSHDVIYKVPSGVTVSIPKPTEIVVSGIDKQQVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOP2 (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.097e-32
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT ++ GQ +K+KGP G+L  V   +V V  ED  ++V    ET RA  ++G  R    N+V GV+KGFEKKL++ GVGYRAAL+G+ L L+LG+SH V   IP+GI + V + T I V G D   +GQ AA
Sbjct:    2 SRVGKKPVTVPSGVTASVEGQTVKMKGPKGQLHFVVHDDVDVKFEDGSVKVAPRFETNRAQALYGTARAQIANLVEGVTKGFEKKLEITGVGYRAALQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQKVGQVAA 146          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_LISIN1.816e-3243.8450S ribosomal protein L6 OS=Listeria innocua GN=rp... [more]
RL6_CAUCR1.816e-3249.6650S ribosomal protein L6 OS=Caulobacter crescentus... [more]
RL6_CAUCN1.816e-3249.6650S ribosomal protein L6 OS=Caulobacter crescentus... [more]
RL6_RHOPT2.372e-3248.9750S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_RHOPS2.372e-3248.9750S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_RHOPA2.372e-3248.9750S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_RHOP52.372e-3248.2850S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_PHEZH2.372e-3248.2850S ribosomal protein L6 OS=Phenylobacterium zucin... [more]
RL6_BARHE2.372e-3249.6650S ribosomal protein L6 OS=Bartonella henselae GN... [more]
RL6_RHOP23.097e-3248.9750S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
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