CX294833
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_DICTD (50S ribosomal protein L6 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplF PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32 Identity = 64/146 (43.84%), Postives = 101/146 (69.18%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITL-GGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIG++P+ +P NV + + G + VKGPLG++ + + + + D+ + V + + + +HGL R L +NMV+GV++GFEK+L++ G GYRA ++G LVL +GFSHPV + IP G+ V+V++NT+I+V G DK +GQFAA Sbjct: 2 SRIGRKPVPIPQNVQVEIKDGNCVSVKGPLGQIEKTFSPLLTIKKVDNQIVVERPNDEKFVKALHGLTRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLVLEVGFSHPVELEIPTGLTVSVQDNTKISVKGIDKELVGQFAA 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRUME (50S ribosomal protein L6 OS=Brucella melitensis GN=rplF PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32 Identity = 74/145 (51.03%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+P+ VP+ VT ++ GQ +K KG GELS V EV V ED +RV ++R A G+ RT+ N+ VGV GFEKKL++ GVGYRAA++G+ L LSLGFSH V +P GI V V + T I V+G DK +GQ AA Sbjct: 2 SRIGKKPVPVPAGVTASVEGQTVKAKGAKGELSFVVHDEVLVKMEDGAVRVDPRDQSREARSKWGMSRTMISNIFVGVKDGFEKKLEISGVGYRAAMQGKNLQLSLGFSHEVVYDVPAGITVAVPKPTEIVVTGIDKQQVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_THICR (50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32 Identity = 70/145 (48.28%), Postives = 92/145 (63.45%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRI K PI +PS V +T+ G D+ VKG G LS + V V ED + V E++ A G R++ +NMV+GV++GFEKKLQ+VGVGYRA +G+VL L+LGFSHPV +P+G+ V T I V G DK +GQ AA Sbjct: 2 SRIAKSPITLPSGVDVTINGTDVSVKGSKGALSKTFNHAVSVSLEDGVVTVAPKNESKNAWAQAGTARSIINNMVLGVTEGFEKKLQLVGVGYRAQAQGKVLNLTLGFSHPVNHELPEGVTVETPSQTEIVVKGADKQVVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METS4 (50S ribosomal protein L6 OS=Methylobacterium sp. (strain 4-46) GN=rplF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32 Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VP+ VT T+ GQ++K+KG GELS P V+V D + V+ +T+ A M GL R N++ GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH V IP GI + I V+G DK +GQ AA Sbjct: 2 SRVGKKPVTVPAGVTATVDGQNVKIKGAKGELSFRVPDLVEVSHADGAISVQPRSQTKEARAMWGLSRAQVANLIEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDVEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METI4 (50S ribosomal protein L6 OS=Methylacidiphilum infernorum (isolate V4) GN=rplF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32 Identity = 64/145 (44.14%), Postives = 104/145 (71.72%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK PI++P + +++ G ++ ++G G+L P +KV ++D L + T ++R++ M+GL R+L +N V+GV +GF+KKL++ G+G+RAA+EG+ LV++LGFSHPV IP+GI V V++NT++T+ G DK +G AA Sbjct: 2 SRIGKLPIKLPPGIKVSIEGNNVTLEGKKGKLFHRLPEFLKVHQQDGSLILENTADSRQSKAMYGLHRSLLNNAVMGVHEGFQKKLEINGIGFRAAVEGKKLVMNLGFSHPVVYEIPEGISVKVQDNTKLTIEGIDKCLVGAVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_KINRD (50S ribosomal protein L6 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32 Identity = 72/147 (48.98%), Postives = 96/147 (65.31%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SRIG+ PI VP+ V +T+ G + VKGP GELS + V+R ED L+V + + R + +HGL RTL NMV GV+KG+EKKL++VG GYR +G L +LGFSHPV + P GI VE NTR +V+G DK +G+ AA+ Sbjct: 2 SRIGRLPITVPAGVDVTIDGAAVTVKGPKGELSHTVAAPISVERTEDGTLQVTRPDDERVSRSLHGLTRTLISNMVEGVTKGYEKKLEIVGTGYRVTPKGSDLEFALGFSHPVVVKAPAGITFAVENNTRFSVAGIDKQQVGEIAAN 148
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_COLP3 (50S ribosomal protein L6 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplF PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32 Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SR+ K P+ VP+ VTITL GQD+ VKGP+GELS +V V +E++ + + + A G R L +NMV GVSKGFEKKL + GVGYRA G+ L LSLGFSHP++ IP+GI T +T+ G DK +GQ AA+ Sbjct: 2 SRVAKAPVVVPAGVTITLSGQDITVKGPIGELSRTIHSDVVVSQEENNIITNIVADVKGAWAQAGTTRALINNMVEGVSKGFEKKLVLQGVGYRAKAAGKSLDLSLGFSHPIKHAIPEGITCETPSQTEVTLKGCDKHLVGQTAAN 147
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNWW (50S ribosomal protein L6 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32 Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SRIGK+PI +P+ V +++ + VKGP G L P + V +E + L V++ + ++ MHGL R L NMV GVS GFEKKL++VGVGYRA ++G+ LV+S+GFSHPV + P+GI V TRITV G DK +G AA Sbjct: 2 SRIGKKPISLPAGVEVSIKDNAISVKGPKGVLEWALPEGITVVQEGNELVVKRPSDIKQHRAMHGLSRALIANMVQGVSAGFEKKLELVGVGYRAQMQGKKLVISIGFSHPVEVEPPEGIEFEVPAVTRITVKGIDKQLVGNTAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPB (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32 Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619 SR+GK+P+ VPS VT ++ GQ + +KGP G+L + +V+V E+ + V+ VET RA ++G R N++ GV+KGFEKKL + GVGYRAAL+G+ L L+LG+SH V IPDGI + V + T I +SG D +GQ AA Sbjct: 2 SRVGKKPVVVPSGVTASVQGQIVTMKGPKGQLQFIVHDDVEVQFENGSVTVKPRVETNRARALYGTARAQVANLLEGVTKGFEKKLDITGVGYRAALQGKKLQLALGYSHDVVYDIPDGITITVPKPTEIFISGNDSQRVGQVAA 146
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_OCEIH (50S ribosomal protein L6 OS=Oceanobacillus iheyensis GN=rplF PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32 Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 2 Query: 185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622 SR+G +P+E+P V + L + VKGP GELS ++K++ ED+ L V + + + +HG R+L +NMV+GVSKGFEK L+++GVGYRA +G V++ G+SHPV + DGI + V +NT+ITV G DK +G AA+ Sbjct: 2 SRVGLKPVEIPEGVELKLDNNTVTVKGPKGELSRELHPDMKINIEDNVLTVERPSDHKEHRALHGTTRSLINNMVIGVSKGFEKSLEIIGVGYRAQKQGDKTVINAGYSHPVELEAIDGIEIEVPKNTQITVKGIDKELVGAIAAN 147 The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bpback to top |