CX294833

Overview
NameCX294833
Unique NameCX294833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_DICTD (50S ribosomal protein L6 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32
Identity = 64/146 (43.84%), Postives = 101/146 (69.18%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITL-GGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIG++P+ +P NV + +  G  + VKGPLG++   +   + + + D+ + V +  + +    +HGL R L +NMV+GV++GFEK+L++ G GYRA ++G  LVL +GFSHPV + IP G+ V+V++NT+I+V G DK  +GQFAA
Sbjct:    2 SRIGRKPVPIPQNVQVEIKDGNCVSVKGPLGQIEKTFSPLLTIKKVDNQIVVERPNDEKFVKALHGLTRALINNMVLGVTQGFEKRLELQGTGYRARVQGNKLVLEVGFSHPVELEIPTGLTVSVQDNTKISVKGIDKELVGQFAA 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_BRUME (50S ribosomal protein L6 OS=Brucella melitensis GN=rplF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.284e-32
Identity = 74/145 (51.03%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+P+ VP+ VT ++ GQ +K KG  GELS V   EV V  ED  +RV    ++R A    G+ RT+  N+ VGV  GFEKKL++ GVGYRAA++G+ L LSLGFSH V   +P GI V V + T I V+G DK  +GQ AA
Sbjct:    2 SRIGKKPVPVPAGVTASVEGQTVKAKGAKGELSFVVHDEVLVKMEDGAVRVDPRDQSREARSKWGMSRTMISNIFVGVKDGFEKKLEISGVGYRAAMQGKNLQLSLGFSHEVVYDVPAGITVAVPKPTEIVVTGIDKQQVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_THICR (50S ribosomal protein L6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 70/145 (48.28%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRI K PI +PS V +T+ G D+ VKG  G LS  +   V V  ED  + V    E++ A    G  R++ +NMV+GV++GFEKKLQ+VGVGYRA  +G+VL L+LGFSHPV   +P+G+ V     T I V G DK  +GQ AA
Sbjct:    2 SRIAKSPITLPSGVDVTINGTDVSVKGSKGALSKTFNHAVSVSLEDGVVTVAPKNESKNAWAQAGTARSIINNMVLGVTEGFEKKLQLVGVGYRAQAQGKVLNLTLGFSHPVNHELPEGVTVETPSQTEIVVKGADKQVVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METS4 (50S ribosomal protein L6 OS=Methylobacterium sp. (strain 4-46) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 70/145 (48.28%), Postives = 94/145 (64.83%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VP+ VT T+ GQ++K+KG  GELS   P  V+V   D  + V+   +T+ A  M GL R    N++ GV+KGFEKKL++ GVGYRAA+ G+VL LSLG+SH V   IP GI +       I V+G DK  +GQ AA
Sbjct:    2 SRVGKKPVTVPAGVTATVDGQNVKIKGAKGELSFRVPDLVEVSHADGAISVQPRSQTKEARAMWGLSRAQVANLIEGVTKGFEKKLEINGVGYRAAVAGKVLKLSLGYSHDVEYEIPAGITITTPRPVEIIVAGIDKQRVGQIAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_METI4 (50S ribosomal protein L6 OS=Methylacidiphilum infernorum (isolate V4) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 64/145 (44.14%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK PI++P  + +++ G ++ ++G  G+L    P  +KV ++D  L +  T ++R++  M+GL R+L +N V+GV +GF+KKL++ G+G+RAA+EG+ LV++LGFSHPV   IP+GI V V++NT++T+ G DK  +G  AA
Sbjct:    2 SRIGKLPIKLPPGIKVSIEGNNVTLEGKKGKLFHRLPEFLKVHQQDGSLILENTADSRQSKAMYGLHRSLLNNAVMGVHEGFQKKLEINGIGFRAAVEGKKLVMNLGFSHPVVYEIPEGISVKVQDNTKLTIEGIDKCLVGAVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_KINRD (50S ribosomal protein L6 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 72/147 (48.98%), Postives = 96/147 (65.31%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDR-EDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SRIG+ PI VP+ V +T+ G  + VKGP GELS      + V+R ED  L+V +  + R +  +HGL RTL  NMV GV+KG+EKKL++VG GYR   +G  L  +LGFSHPV +  P GI   VE NTR +V+G DK  +G+ AA+
Sbjct:    2 SRIGRLPITVPAGVDVTIDGAAVTVKGPKGELSHTVAAPISVERTEDGTLQVTRPDDERVSRSLHGLTRTLISNMVEGVTKGYEKKLEIVGTGYRVTPKGSDLEFALGFSHPVVVKAPAGITFAVENNTRFSVAGIDKQQVGEIAAN 148          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_COLP3 (50S ribosomal protein L6 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplF PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SR+ K P+ VP+ VTITL GQD+ VKGP+GELS     +V V +E++ +      + + A    G  R L +NMV GVSKGFEKKL + GVGYRA   G+ L LSLGFSHP++  IP+GI       T +T+ G DK  +GQ AA+
Sbjct:    2 SRVAKAPVVVPAGVTITLSGQDITVKGPIGELSRTIHSDVVVSQEENNIITNIVADVKGAWAQAGTTRALINNMVEGVSKGFEKKLVLQGVGYRAKAAGKSLDLSLGFSHPIKHAIPEGITCETPSQTEVTLKGCDKHLVGQTAAN 147          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_SYNWW (50S ribosomal protein L6 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SRIGK+PI +P+ V +++    + VKGP G L    P  + V +E + L V++  + ++   MHGL R L  NMV GVS GFEKKL++VGVGYRA ++G+ LV+S+GFSHPV +  P+GI   V   TRITV G DK  +G  AA
Sbjct:    2 SRIGKKPISLPAGVEVSIKDNAISVKGPKGVLEWALPEGITVVQEGNELVVKRPSDIKQHRAMHGLSRALIANMVQGVSAGFEKKLELVGVGYRAQMQGKKLVISIGFSHPVEVEPPEGIEFEVPAVTRITVKGIDKQLVGNTAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_RHOPB (50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 69/145 (47.59%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAA 619
            SR+GK+P+ VPS VT ++ GQ + +KGP G+L  +   +V+V  E+  + V+  VET RA  ++G  R    N++ GV+KGFEKKL + GVGYRAAL+G+ L L+LG+SH V   IPDGI + V + T I +SG D   +GQ AA
Sbjct:    2 SRVGKKPVVVPSGVTASVQGQIVTMKGPKGQLQFIVHDDVEVQFENGSVTVKPRVETNRARALYGTARAQVANLLEGVTKGFEKKLDITGVGYRAALQGKKLQLALGYSHDVVYDIPDGITITVPKPTEIFISGNDSQRVGQVAA 146          
BLAST of CX294833 vs. ExPASy Swiss-Prot
Match: RL6_OCEIH (50S ribosomal protein L6 OS=Oceanobacillus iheyensis GN=rplF PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.012e-32
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  185 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIXVNVEENTRITVSGYDKSAIGQFAAS 622
            SR+G +P+E+P  V + L    + VKGP GELS     ++K++ ED+ L V +  + +    +HG  R+L +NMV+GVSKGFEK L+++GVGYRA  +G   V++ G+SHPV +   DGI + V +NT+ITV G DK  +G  AA+
Sbjct:    2 SRVGLKPVEIPEGVELKLDNNTVTVKGPKGELSRELHPDMKINIEDNVLTVERPSDHKEHRALHGTTRSLINNMVIGVSKGFEKSLEIIGVGYRAQKQGDKTVINAGYSHPVELEAIDGIEIEVPKNTQITVKGIDKELVGAIAAN 147          
The following BLAST results are available for this feature:
BLAST of CX294833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL6_DICTD5.284e-3243.8450S ribosomal protein L6 OS=Dictyoglomus turgidum ... [more]
RL6_BRUME5.284e-3251.0350S ribosomal protein L6 OS=Brucella melitensis GN... [more]
RL6_THICR6.900e-3248.2850S ribosomal protein L6 OS=Thiomicrospira crunoge... [more]
RL6_METS46.900e-3248.2850S ribosomal protein L6 OS=Methylobacterium sp. (... [more]
RL6_METI46.900e-3244.1450S ribosomal protein L6 OS=Methylacidiphilum infe... [more]
RL6_KINRD6.900e-3248.9850S ribosomal protein L6 OS=Kineococcus radiotoler... [more]
RL6_COLP36.900e-3248.6350S ribosomal protein L6 OS=Colwellia psychrerythr... [more]
RL6_SYNWW9.012e-3248.2850S ribosomal protein L6 OS=Syntrophomonas wolfei ... [more]
RL6_RHOPB9.012e-3247.5950S ribosomal protein L6 OS=Rhodopseudomonas palus... [more]
RL6_OCEIH9.012e-3244.5250S ribosomal protein L6 OS=Oceanobacillus iheyens... [more]

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Properties
Property NameValue
Genbank descriptionC05056E04SK PhIFruit1 Citrus clementina cDNA clone C05056E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294833 ID=CX294833; Name=CX294833; organism=Citrus clementina; type=EST; length=623bp
AGGCAGGTGTTAAAAGTTGATTGATGCTCAAAGCCGCTTAAGCGAAATGG
CTTCTTCTATCGCCTCTTCTTTCCATACCAGCAATTTGAAGTCCATATTT
TTTGGTGAGAGAAATGGATTCAGCATGTCTAATGTTCCTGTAAATCGTGT
TGGCTTTTCAAGGAAGACTATAGAATGTAAGGAATCAAGAATAGGAAAAC
AGCCTATAGAAGTGCCATCCAATGTGACAATCACATTAGGAGGTCAAGAT
CTAAAAGTAAAGGGTCCACTGGGAGAACTTTCACTTGTTTATCCACGAGA
AGTGAAGGTTGATAGGGAGGACTCATTCCTGAGGGTCAGAAAGACTGTAG
AGACAAGAAGGGCCAATCAAATGCACGGGCTTTTCAGGACACTGACTGAC
AACATGGTGGTTGGAGTATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGT
TGGTGTTGGATATCGTGCTGCATTAGAAGGACAAGTCTTGGTATTGAGTC
TTGGGTTCTCGCATCCAGTTAGGATGACAATCCCAGATGGCATANAAGTG
AATGTGGAGGAAAACACCAGGATCACTGTTAGTGGATACGATAAAAGCGC
AATTGGTCAGTTTGCTGCTTCCA
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