CX294912

Overview
NameCX294912
Unique NameCX294912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 198
            PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:  253 PSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGW-NSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNL 210
            PSA D+ A R+PGYG+ TNIINGGIECG+G  N+   +RIGF+  +C   G   G NLDCY Q P+G  L
Sbjct:  264 PSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.868e-16
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 198
            PS  D  A R+PG+G+ TNIINGGIECG G +S VA+RIGF+  +C   G+  G+NLDCY+Q P+
Sbjct:  201 PSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 225
            PS  D +A RLPG+G+ TNIINGG+ECGKG    V +RIGF+  +C    +  G+NLDC NQ P+G  L+  ++
Sbjct:  241 PSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 198
            PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +C    +  G+NLDCYNQ P+
Sbjct:  256 PSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.121e-15
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 189
            PSA D  A R+PGYG+ TNIINGGIECG G N    +RIG++  +C   G   G NLDCYNQ
Sbjct:  195 PSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQ 256          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.029e-15
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 189
            PS  D  A+R+PGYG+ TNIINGG+EC  G N+ V +RIGF+  +CG   +  G+NLDC NQ
Sbjct:  186 PSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQ 247          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.671e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVA-NRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 201
            PS +D ++ RLPGYG+ TNIINGG ECGKG+++  A +R+G++  +C  F +  GDN+ C +Q PYG
Sbjct:  188 PSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.489e-14
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQ 189
            PS  D  A+R+PGYG+ TNIING  ECG G N+   +RIGF+  +CG   +  G+NLDC NQ
Sbjct:  186 PSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQ 247          
BLAST of CX294912 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 PSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPY 198
            PS+ D  A R+PGYG+ TNII+GG+ECGKG  S VA+RIG++            DNLDCYNQ P+
Sbjct:  146 PSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
The following BLAST results are available for this feature:
BLAST of CX294912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CHI1_HORVU3.727e-1655.3826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI6_POPTR4.868e-1655.71Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_HORVU4.868e-1656.9226 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIB_VITVI8.304e-1650.00Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SECCE8.304e-1655.38Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI8_ORYSJ4.121e-1558.06Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLCI7.029e-1554.84Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI11_ORYSJ2.671e-1450.75Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC3.489e-1453.23Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_AVESA2.261e-1353.85Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05057D09SK PhIFruit1 Citrus clementina cDNA clone C05057D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294912 ID=CX294912; Name=CX294912; organism=Citrus clementina; type=EST; length=431bp
AAACCATCAGCAAATGACGTAAACGCCAGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCAAAGGTTGGAATA
GCTTTGTAGCTAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGCGACAATCTTGATTGCTACAACCAAGGGCCTTATGG
CCCTAATTTGATGGCACAATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATTGTAGGTAAA
TTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCTCCNNNNNAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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