CX294939

Overview
NameCX294939
Unique NameCX294939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.066e-30
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV LP GTG+S+K+AV+  GE   +AK AGADL G +DL+E
Sbjct:   25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVE 101          

HSP 2 Score: 55.4546 bits (132), Expect = 1.066e-30
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G MEFD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.808e-30
Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            SKR+ EI+ L + +K Y L  A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGKSV+V V A+GEK +EAK AGAD VG ++L ++
Sbjct:    5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADK 103          

HSP 2 Score: 49.6766 bits (117), Expect = 1.808e-30
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            GF++FD  IA+PDMM  +  LGK+LGPRGLMP
Sbjct:  108 GFVDFDVAIATPDMMKVIGKLGKVLGPRGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.808e-30
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 2
Query:  251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            + Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG++V++AV+ +GEK  EAK AGA+L G +DL+E
Sbjct:   18 RAYQPLEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVE 101          

HSP 2 Score: 53.1434 bits (126), Expect = 1.808e-30
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            I  G M FD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  103 ISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.808e-30
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   +    E +    L+ A+ ++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+  GE   +AK+AGADL G +DL+E
Sbjct:    5 SKRMKALSTKIEDRTYAPLE-ALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVE 101          

HSP 2 Score: 54.299 bits (129), Expect = 1.808e-30
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M+FD LIA+PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.066e-30
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   + +  E ++ Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV+ +GEK +EA  AGADL G +DL++
Sbjct:    5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVD 101          

HSP 2 Score: 52.373 bits (124), Expect = 3.066e-30
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M FD LI++PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.066e-30
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            SKR   + +  E ++ Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV+ +GEK +EA  AGADL G +DL++
Sbjct:    5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVD 101          

HSP 2 Score: 52.373 bits (124), Expect = 3.066e-30
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            +I  G M FD LI++PDMM KVA LG++LGPRGLMP
Sbjct:  102 SINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.769e-30
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523
            SKR+LE + L +  K YDL  A+ L+K+ ++ KF ET E H +  ID +  DQ +R T+ LP GTGK VKV V A+GEK  EA+ AGAD VG +DL+E+ +++ +
Sbjct:    5 SKRYLEAKKLVDRTKYYDLDEAVELVKKTATAKFDETIELHIQTGIDYRKPDQHIRGTIVLPHGTGKEVKVLVFARGEKAKEAQEAGADYVGAEDLVEKIEKEGF 109          

HSP 2 Score: 50.8322 bits (120), Expect = 6.769e-30
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1
Query:  508 KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            K GF++FD  IA+PDMM  +  LGKILGPRGLMP
Sbjct:  106 KEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.814e-30
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511
            +KR   +Q   E +K Y +++ +S +K ++S KF ET E   RL +DP++ DQ +R  V LP GTGK V+VAV A+G K DEAKNAGAD+VG DDL E+ K
Sbjct:    6 AKRLQTLQAKVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEIK 106          

HSP 2 Score: 48.1358 bits (113), Expect = 8.814e-30
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            IK G + FD +IA+PDMM  V  +G+ILGP+GLMP
Sbjct:  105 IKNGNINFDMVIATPDMMALVGKVGRILGPKGLMP 139          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.817e-30
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502
            KRF   +   EGK+   ++ A++LLK  S TKF ET E   +L +DP++ DQ +R TV+LP GTGK+V+VAV A+G K +EA  AGAD+VG +DL+E
Sbjct:    6 KRFAAAKAAVEGKENITVEEAVALLKGNSKTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLME 102          

HSP 2 Score: 52.373 bits (124), Expect = 8.817e-30
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:  502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            T++GG +EFD+ IA+PDMM  V  LGK+LGPR LMP
Sbjct:  103 TVQGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMP 138          
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HYPNA (50S ribosomal protein L1 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.817e-30
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  203 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505
            T+ KR   I+   +  K Y +  A+ L+K  +  KF E+ E    L +DPKY DQQ+R+ V+LP GTGK+++VAV A+ +K +EA  AGAD+VG DDL E+
Sbjct:    3 TKGKRARAIEQTVDKTKAYSVSEAVKLVKSNAKAKFDESIEIAINLGVDPKYADQQVRSVVNLPAGTGKTIRVAVFAKDKKAEEALAAGADIVGADDLFEK 103          

HSP 2 Score: 56.6102 bits (135), Expect = 8.817e-30
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609
            + GGFM+FD++IA+PDMM  V  LGK+LGPRGLMP
Sbjct:  104 VNGGFMDFDRVIATPDMMGLVGRLGKVLGPRGLMP 138          
The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMS1.066e-3059.7450S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_FERNB1.808e-3050.5150S ribosomal protein L1 OS=Fervidobacterium nodos... [more]
RL1_SYNS31.808e-3057.1450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMP1.808e-3051.0250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMT3.066e-3051.0250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM13.066e-3051.0250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_THENN6.769e-3047.6250S ribosomal protein L1 OS=Thermotoga neapolitana... [more]
RL1_HELHP8.814e-3050.5050S ribosomal protein L1 OS=Helicobacter hepaticus... [more]
RL1_JANSC8.817e-3050.5250S ribosomal protein L1 OS=Jannaschia sp. (strain... [more]
RL1_HYPNA8.817e-3045.5450S ribosomal protein L1 OS=Hyphomonas neptunium (... [more]

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Properties
Property NameValue
Genbank descriptionC05057H01SK PhIFruit1 Citrus clementina cDNA clone C05057H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bp
GAGACAGAACAAAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTG
CTGTCGAAGCTGATACTGACTTGGCCACTGACGATGTGGAGGACGATACT
CAGGGAGGTGCTGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTAT
TTCAACTAAGCCTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACA
GGACTAGGTCTAAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAG
AAAGAGTATGATTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCAAG
TACAAAGTTCACGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATC
CCAAATACAATGATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGA
ACTGGAAAATCTGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGA
TGAAGCAAAAAATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTG
AACAATAAAAGGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAG
ATATGATGGTTAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGA
CTCATGCCA
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