CX294939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.066e-30 Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 272 AISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 A+S++K+ ++ KF ET EAH RL IDPKY DQQLR TV LP GTG+S+K+AV+ GE +AK AGADL G +DL+E Sbjct: 25 ALSIIKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVVLPHGTGQSIKIAVITSGENVSKAKAAGADLFGEEDLVE 101 HSP 2 Score: 55.4546 bits (132), Expect = 1.066e-30 Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G MEFD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMEFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.808e-30 Identity = 50/99 (50.51%), Postives = 72/99 (72.73%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 SKR+ EI+ L + +K Y L A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGKSV+V V A+GEK +EAK AGAD VG ++L ++ Sbjct: 5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGKSVRVLVFAKGEKAEEAKQAGADYVGAEELADK 103 HSP 2 Score: 49.6766 bits (117), Expect = 1.808e-30 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 514 GFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 GF++FD IA+PDMM + LGK+LGPRGLMP Sbjct: 108 GFVDFDVAIATPDMMKVIGKLGKVLGPRGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.808e-30 Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 251 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 + Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP+GTG++V++AV+ +GEK EAK AGA+L G +DL+E Sbjct: 18 RAYQPLEAIQLVKENATAKFDETMEAHVRLGIDPKYTDQQLRTTVALPQGTGQTVRIAVITRGEKVAEAKAAGAELSGDEDLVE 101 HSP 2 Score: 53.1434 bits (126), Expect = 1.808e-30 Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 I G M FD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 103 ISKGEMNFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.808e-30 Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + E + L+ A+ ++K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+S+K+AV+ GE +AK+AGADL G +DL+E Sbjct: 5 SKRMKALSTKIEDRTYAPLE-ALGIVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPNGTGQSIKIAVITSGENVAKAKSAGADLFGEEDLVE 101 HSP 2 Score: 54.299 bits (129), Expect = 1.808e-30 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M+FD LIA+PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGNMDFDLLIATPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.066e-30 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + + E ++ Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV+ +GEK +EA AGADL G +DL++ Sbjct: 5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVD 101 HSP 2 Score: 52.373 bits (124), Expect = 3.066e-30 Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M FD LI++PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 3.066e-30 Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 SKR + + E ++ Y AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ +++AV+ +GEK +EA AGADL G +DL++ Sbjct: 5 SKRMTTLLSKVE-ERSYSPIEAIKLVKENANAKFDETIEAHIRLGIDPKYTDQQLRTTVALPSGTGQKIRIAVVTRGEKVNEATKAGADLAGEEDLVD 101 HSP 2 Score: 52.373 bits (124), Expect = 3.066e-30 Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 +I G M FD LI++PDMM KVA LG++LGPRGLMP Sbjct: 102 SINKGEMNFDLLISTPDMMPKVAKLGRVLGPRGLMP 137
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.769e-30 Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*KEDSW 523 SKR+LE + L + K YDL A+ L+K+ ++ KF ET E H + ID + DQ +R T+ LP GTGK VKV V A+GEK EA+ AGAD VG +DL+E+ +++ + Sbjct: 5 SKRYLEAKKLVDRTKYYDLDEAVELVKKTATAKFDETIELHIQTGIDYRKPDQHIRGTIVLPHGTGKEVKVLVFARGEKAKEAQEAGADYVGAEDLVEKIEKEGF 109 HSP 2 Score: 50.8322 bits (120), Expect = 6.769e-30 Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 Query: 508 KGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 K GF++FD IA+PDMM + LGKILGPRGLMP Sbjct: 106 KEGFLDFDVAIATPDMMRVIGRLGKILGPRGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.814e-30 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 2 Query: 209 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ*K 511 +KR +Q E +K Y +++ +S +K ++S KF ET E RL +DP++ DQ +R V LP GTGK V+VAV A+G K DEAKNAGAD+VG DDL E+ K Sbjct: 6 AKRLQTLQAKVEPQKVYSIQSGVSAVKSLASAKFDETVEVALRLGVDPRHADQMIRGAVVLPHGTGKKVRVAVFAKGIKADEAKNAGADVVGADDLAEEIK 106 HSP 2 Score: 48.1358 bits (113), Expect = 8.814e-30 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 IK G + FD +IA+PDMM V +G+ILGP+GLMP Sbjct: 105 IKNGNINFDMVIATPDMMALVGKVGRILGPKGLMP 139
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_JANSC (50S ribosomal protein L1 OS=Jannaschia sp. (strain CCS1) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.817e-30 Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 2 Query: 212 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIE 502 KRF + EGK+ ++ A++LLK S TKF ET E +L +DP++ DQ +R TV+LP GTGK+V+VAV A+G K +EA AGAD+VG +DL+E Sbjct: 6 KRFAAAKAAVEGKENITVEEAVALLKGNSKTKFDETIEIAMKLGVDPRHADQMVRGTVNLPNGTGKTVRVAVFARGPKAEEATAAGADIVGAEDLME 102 HSP 2 Score: 52.373 bits (124), Expect = 8.817e-30 Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 Query: 502 TIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 T++GG +EFD+ IA+PDMM V LGK+LGPR LMP Sbjct: 103 TVQGGTIEFDRCIATPDMMPIVGRLGKVLGPRNLMP 138
BLAST of CX294939 vs. ExPASy Swiss-Prot
Match: RL1_HYPNA (50S ribosomal protein L1 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 8.817e-30 Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 2 Query: 203 TRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQ 505 T+ KR I+ + K Y + A+ L+K + KF E+ E L +DPKY DQQ+R+ V+LP GTGK+++VAV A+ +K +EA AGAD+VG DDL E+ Sbjct: 3 TKGKRARAIEQTVDKTKAYSVSEAVKLVKSNAKAKFDESIEIAINLGVDPKYADQQVRSVVNLPAGTGKTIRVAVFAKDKKAEEALAAGADIVGADDLFEK 103 HSP 2 Score: 56.6102 bits (135), Expect = 8.817e-30 Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 Query: 505 IKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMP 609 + GGFM+FD++IA+PDMM V LGK+LGPRGLMP Sbjct: 104 VNGGFMDFDRVIATPDMMGLVGRLGKVLGPRGLMP 138 The following BLAST results are available for this feature:
BLAST of CX294939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294939 ID=CX294939; Name=CX294939; organism=Citrus clementina; type=EST; length=609bpback to top |