CX294952

Overview
NameCX294952
Unique NameCX294952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1257 contig Ccv1_Contig1257:18..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.096e-45
Identity = 99/187 (52.94%), Postives = 117/187 (62.57%), Query Frame = 1
Query:  160 SSAFPPNPSLRFSSPKNDNGVVVCASK-NANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            SSA P   SL FS      GVV  +S  + NN P+TGV+F PFEEVKK    +P     SLAR ++ D  EAAINEQINVEYNVSYVYH+M+AYFDRDNVALKGL                K MEYQN+RGG+V L  I+ P+S+F+HAEKGDALYAME                H+VA +N+D QL
Sbjct:   24 SSASPSVMSLSFSRHTGGRGVVAASSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSSEAAINEQINVEYNVSYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNQRGGRVTLHPIVSPISDFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQL 210          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.274e-45
Identity = 100/197 (50.76%), Postives = 119/197 (60.41%), Query Frame = 1
Query:  133 ALNPLFSSVSSAFPPNPSLRFSSPKNDNGVVVCASK--NANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            AL+P       +  P+ SL FS        VV A+   + NN P+TGV+F PFEEVKK    +P     SLAR +F D  EA INEQINVEYNVSYVYH+M+AYFDRDNVA+KGL                K MEYQN+RGG+VKL  I+ P+SEF+HAEKGDALYAME                HKVA +N+D QL
Sbjct:   15 ALSPKPLLPHGSASPSVSLGFSRKVGGGRAVVVAAATVDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQL 211          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI_MALXI (Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.681e-43
Identity = 103/209 (49.28%), Postives = 118/209 (56.46%), Query Frame = 1
Query:  133 ALNPLFSSVSSAFPPNPS-------------LRFSSPK-NDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            AL P   S  S F P PS             L F + K     + VCAS      PLTGVIF PFEEVKK    VPT PQ+SLAR  + D+CE+AINEQINVEYN SYVYH++FAYFDRDNVALKG                 KLM+YQN RGG+V L +I    SEF+H EKGDALYAME                H VA +N+D Q+
Sbjct:    2 ALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGSRNLRVCAS----TVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHAIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQM 206          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI1_SOYBN (Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 1.134e-42
Identity = 103/209 (49.28%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  133 ALNPLFSSVSSAFPPNPS-------------LRFSSPK-NDNGVVVCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            AL P   S  S F P PS             L F + K     + VCAS      PLTGVIF PFEEVKK    VPT PQ+SLAR  + D+CE+AINEQINVEYN SYVYH++FAYFDRDNVALKG                 KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA +N+D Q+
Sbjct:    2 ALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGSRNLRVCAS----TVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNAPSEFEHVEKGDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQM 206          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI3_VIGUN (Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.349e-42
Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = 1
Query:  226 VCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            VCA+ +   +PLTGVIF PF+E+KK+   VP  P +SL+R  ++D+ EAAINEQINVEYNVSYVYH++FAYFDRDN+ALKGL                KL++YQN RGG+V L  I  P SEF+H EKGDALYAME                H VA +N+D QL
Sbjct:   48 VCAAASNAPAPLTGVIFEPFQELKKDYLAVPIAPNVSLSRQNYSDEAEAAINEQINVEYNVSYVYHSLFAYFDRDNIALKGLAKFFKESSEEEREHAEKLIKYQNIRGGRVVLHPITSPPSEFEHPEKGDALYAMELALSLEKLTNEKLLYVHSVADRNNDAQL 211          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI1_PEA (Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.792e-41
Identity = 86/159 (54.09%), Postives = 103/159 (64.78%), Query Frame = 1
Query:  241 NANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            +A  +PLTGVIF PFEEVKK+   VP+VP +SLAR  F D+CE+ INEQINVEYN SYVYH++FAYFDRDNVALKG                 KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA +N+D+++
Sbjct:   46 SATTAPLTGVIFEPFEEVKKDYLAVPSVPLVSLARQNFADECESVINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEHREHAEKLMKYQNTRGGRVVLHPIKDVPSEFEHVEKGDALYAMELALSLEKLTNEKLLNVHSVAERNNDLEM 204          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI_PHAVU (Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 89/159 (55.97%), Postives = 101/159 (63.52%), Query Frame = 1
Query:  241 NANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            +A+  PLTGVIF PFEEVKKE   VPT  Q+SLAR  + D+CE+AINEQINVEYN SYVYH++FAYFDRDNVALKG                 KLM+YQN RGG+V L  I    SEF+H EKGDALYAME                H VA +N D QL
Sbjct:   47 SASTVPLTGVIFEPFEEVKKEELAVPTAGQVSLARQYYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFARFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKGDALYAMELALSLEKLVNEKLRSVHSVADRNKDPQL 205          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 86/163 (52.76%), Postives = 104/163 (63.80%), Query Frame = 1
Query:  226 VCASKNANNSPLTGVIFAPFEEVKKELDLVPTVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQ 714
            VCA+ NA  +PL GVIF PF+E+KK+   VP    + LAR  + DD E+AINEQINVEYNVSYVYHA+FAYFDRDN+ALKGL                +L++YQN RGG+V L  I  P SEF+H+EKGDALYAME                H VA +N+D Q
Sbjct:   46 VCAASNAP-APLAGVIFEPFQELKKDYLAVPIAHNVXLARQNYADDSESAINEQINVEYNVSYVYHALFAYFDRDNIALKGLAKFFKESSEEEREHAEQLIKYQNIRGGRVVLHPITSPPSEFEHSEKGDALYAMELALSLEKLTNEKLLHVHSVAERNNDPQ 207          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_PAGBE (Ferritin, heavy subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 47/125 (37.60%), Postives = 61/125 (48.80%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHD 708
            S  R  F  DCEAAIN QIN+E   SY Y +M  YFDRD+VAL G                 KL+++QN+RGG++ LQ +  P    D  E G  L A+E                HKV  +++D
Sbjct:    3 SQVRQNFHKDCEAAINRQINLELYASYSYLSMAYYFDRDDVALPGFAHFFKQQSEEEREHAEKLLKFQNQRGGRIFLQDVKKP----DRDEWGSGLDALECALQLEKNVNQSLLDLHKVCSEHND 123          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI2_RANCA (Ferritin, middle subunit OS=Rana catesbeiana PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 1
Query:  331 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            +S  R  +  DCEAA+N  +N+E   SY Y +M+A+FDRD+VAL  +                K M+YQNKRGG+V LQ I  P    +  E G+ L AM+                HK+A    D  L
Sbjct:    2 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQDIKKP----ERDEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHL 126          
The following BLAST results are available for this feature:
BLAST of CX294952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
FRI1_BRANA1.096e-4552.94Ferritin-1, chloroplastic OS=Brassica napus GN=LSC... [more]
FRI1_ARATH9.274e-4550.76Ferritin-1, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI_MALXI8.681e-4349.28Ferritin, chloroplastic OS=Malus xiaojinensis PE=3... [more]
FRI1_SOYBN1.134e-4249.28Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4[more]
FRI3_VIGUN7.349e-4253.05Ferritin-3, chloroplastic OS=Vigna unguiculata PE=... [more]
FRI1_PEA2.792e-4154.09Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV... [more]
FRI_PHAVU8.125e-4155.97Ferritin, chloroplastic OS=Phaseolus vulgaris GN=P... [more]
FRI2_SOYBN1.173e-3952.76Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRIH_PAGBE2.910e-1437.60Ferritin, heavy subunit OS=Pagothenia bernacchii P... [more]
FRI2_RANCA2.910e-1435.66Ferritin, middle subunit OS=Rana catesbeiana PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05065A03SK DroRLeaf1 Citrus clementina cDNA clone C05065A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294952 ID=CX294952; Name=CX294952; organism=Citrus clementina; type=EST; length=717bp
TTGCGTTTCACTTCATTTGCTCCTCTTTTCAAATCTTTTTGTCCTTGAAA
TCCGTAAACAAAAACATTTGAAAAAAAAAAAATGTTGCTCGAAGCATCTT
CAGCTTTATCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTT
TCCTCTGTTTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTC
ACCGAAAAATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACA
ACAGCCCCTTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAG
GAGCTCGATTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAA
GTTCACTGACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAAT
ACAATGTCTCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGAC
AATGTCGCGCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGA
GGAAAGAGAGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAG
GTAAAGTGAAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCAT
GCTGAGAAAGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGA
GAAGCTAACAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCCACAAGA
ACCATGATGTGCAGTTG
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