CX294952

Overview
NameCX294952
Unique NameCX294952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1257 contig Ccv1_Contig1257:18..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIS_LYMST (Soma ferritin OS=Lymnaea stagnalis PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 48/129 (37.21%), Postives = 61/129 (47.29%), Query Frame = 1
Query:  331 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            +S AR  +  + EA IN QIN+E   SY Y +M  YFDRD+VAL G                 KLM+YQNKRGG++ LQ I  P    D  E G  L AM+                HK+   + D Q+
Sbjct:    3 VSQARQNYHAESEAGINRQINMELYASYSYQSMAYYFDRDDVALPGFHKFFKHQSEEEREHAEKLMKYQNKRGGRIVLQDIKKP----DRDEWGTGLEAMQVALQLEKSVNQSLLDLHKLCTSHDDAQM 127          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_TRENE (Ferritin, heavy subunit OS=Trematomus newnesi PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 48/125 (38.40%), Postives = 60/125 (48.00%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHD 708
            S  R  F  DCEAAIN QIN+E   SY Y +M  YFDRD+VAL G                 KLM+ QN+RGG++ LQ +  P    D  E G  L A+E                HKV  +++D
Sbjct:    3 SQVRQNFHKDCEAAINRQINLELYASYSYLSMAYYFDRDDVALPGFAHFFKHQSEEEREHAEKLMKQQNQRGGRIFLQDVKKP----DRDEWGSGLDALECALQLEKNVNQSLLDLHKVCSEHND 123          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_CHICK (Ferritin heavy chain OS=Gallus gallus GN=FTH PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 49/128 (38.28%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  +  DCEAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A + +D  L
Sbjct:    6 SQVRQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWENGLTAMECALHLEKNVNQSLLELHKLATEKNDPHL 129          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH1_XENLA (Ferritin heavy chain 1 OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 48/128 (37.50%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  F  DCEAAIN  +N+E   SYVY +M  YFDRD+VAL  +                K ++YQNKRGG+V LQ I  P    +  E  + L AM+                HK+A    D QL
Sbjct:    3 SQVRQNFNSDCEAAINRMVNLEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRVVLQDIKKP----ERDEWSNTLEAMQAALQLEKTVNQALLDLHKLASDKVDPQL 126          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH2_XENLA (Ferritin heavy chain 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 47/128 (36.72%), Postives = 59/128 (46.09%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  F  DCEAAIN  +N+E   SYVY +M  YFDRD+VAL  +                K ++YQNKRGG+V LQ I  P    +  E G+ L A +                HK+A    D  L
Sbjct:    3 SQVRQNFHSDCEAAINRMVNMEMYASYVYLSMSYYFDRDDVALHHVAKFFKEQSHEEREHAEKFLKYQNKRGGRVVLQDIKKP----ERDEWGNTLEATQAALQLEKTVNQALLDLHKLASDKVDAHL 126          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_PONAB (Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 51/133 (38.35%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P  + D  E G  L AME                HK+A   +D  L
Sbjct:    2 TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_MOUSE (Ferritin heavy chain OS=Mus musculus GN=Fth1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 49/133 (36.84%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +    L AME                HK+A   +D  L
Sbjct:    2 TTASPSQVRQNYHQDAEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_HUMAN (Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 51/133 (38.35%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P  + D  E G  L AME                HK+A   +D  L
Sbjct:    2 TTASTSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_HORSE (Ferritin heavy chain OS=Equus caballus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 48/128 (37.50%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  +  D EAAIN QIN+E + SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A   +D  L
Sbjct:    7 SQVRQNYHQDSEAAINRQINLELHASYVYLSMSFYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DQDDWENGLKAMECALHLEKNVNESLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_CRIGR (Ferritin heavy chain OS=Cricetulus griseus GN=FTH1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 49/133 (36.84%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +    L AME                HK+A   +D  L
Sbjct:    7 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKSVNQSLLELHKLATDKNDPHL 135          
The following BLAST results are available for this feature:
BLAST of CX294952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
FRIS_LYMST3.800e-1437.21Soma ferritin OS=Lymnaea stagnalis PE=2 SV=2[more]
FRIH_TRENE3.800e-1438.40Ferritin, heavy subunit OS=Trematomus newnesi PE=1... [more]
FRIH_CHICK3.800e-1438.28Ferritin heavy chain OS=Gallus gallus GN=FTH PE=2 ... [more]
FRIH1_XENLA8.467e-1437.50Ferritin heavy chain 1 OS=Xenopus laevis PE=2 SV=2[more]
FRIH2_XENLA3.217e-1336.72Ferritin heavy chain 2 OS=Xenopus laevis PE=2 SV=1[more]
FRIH_PONAB4.202e-1338.35Ferritin heavy chain OS=Pongo abelii GN=FTH1 PE=2 ... [more]
FRIH_MOUSE4.202e-1336.84Ferritin heavy chain OS=Mus musculus GN=Fth1 PE=1 ... [more]
FRIH_HUMAN4.202e-1338.35Ferritin heavy chain OS=Homo sapiens GN=FTH1 PE=1 ... [more]
FRIH_HORSE4.202e-1337.50Ferritin heavy chain OS=Equus caballus GN=FTH1 PE=... [more]
FRIH_CRIGR5.488e-1336.84Ferritin heavy chain OS=Cricetulus griseus GN=FTH1... [more]

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Properties
Property NameValue
Genbank descriptionC05065A03SK DroRLeaf1 Citrus clementina cDNA clone C05065A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294952 ID=CX294952; Name=CX294952; organism=Citrus clementina; type=EST; length=717bp
TTGCGTTTCACTTCATTTGCTCCTCTTTTCAAATCTTTTTGTCCTTGAAA
TCCGTAAACAAAAACATTTGAAAAAAAAAAAATGTTGCTCGAAGCATCTT
CAGCTTTATCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTT
TCCTCTGTTTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTC
ACCGAAAAATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACA
ACAGCCCCTTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAG
GAGCTCGATTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAA
GTTCACTGACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAAT
ACAATGTCTCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGAC
AATGTCGCGCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGA
GGAAAGAGAGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAG
GTAAAGTGAAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCAT
GCTGAGAAAGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGA
GAAGCTAACAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCCACAAGA
ACCATGATGTGCAGTTG
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