CX294952

Overview
NameCX294952
Unique NameCX294952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1257 contig Ccv1_Contig1257:18..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_FELCA (Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 49/133 (36.84%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A   +D  L
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_ECHGR (Ferritin heavy chain OS=Echinococcus granulosus PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 47/128 (36.72%), Postives = 59/128 (46.09%), Query Frame = 1
Query:  331 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQ 714
            +SL R  F ++CE  IN QIN+E   SY+Y AM  +FDRD+VAL G                 KLM YQ  RGG++  Q I  P +     E    L AME                  VA+KN+D Q
Sbjct:    1 MSLVRQNFHEECERGINRQINMELYASYLYLAMSQHFDRDDVALPGFREFFAKASEEEREHAIKLMRYQCGRGGRIVYQDIAKPQT----TEWASGLEAMEMALKIEREVNESLLALRGVANKNNDSQ 124          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_CANFA (Ferritin heavy chain OS=Canis familiaris GN=FTH1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 49/133 (36.84%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A   +D  L
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWENGLNAMECALHLEKSVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH3_XENLA (Ferritin heavy chain, oocyte isoform OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  F  +CEAAIN Q+N+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    +  E  + L A+E                HK++  ++D  L
Sbjct:    3 SQIRQNFHQECEAAINRQVNMELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKMQNQRGGRLFLQDIKKP----ERDEWANGLEALECSLQLEKNVNQSILELHKLSTDHNDPHL 126          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_TRIVU (Ferritin heavy chain OS=Trichosurus vulpecula GN=FTH1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 49/133 (36.84%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +    L AME                HK+A   +D  L
Sbjct:    2 TTSSPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_SALSA (Ferritin, heavy subunit OS=Salmo salar PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHD 708
            S  R  F  DCEAAIN QIN+E   SYVY +M  YFDRD+ AL                   KLM+ QN+RGG++ LQ +  P    +  E G  + A+E                HKV  +++D
Sbjct:    3 SQVRQNFHQDCEAAINRQINLELYASYVYLSMAYYFDRDDQALHNFAKFFKNQSHEEREHAEKLMKVQNQRGGRIFLQDVKKP----EKDEWGSGVEALESSLQLEKSVNQSLLDLHKVCSEHND 123          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_BOVIN (Ferritin heavy chain OS=Bos taurus GN=FTH1 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 48/133 (36.09%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  +LM+ QN+RGG++ LQ I  P    D  +  + L AME                HK+A + +D  L
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQNQRGGRIFLQDIKKP----DRDDWENGLTAMECALCLERSVNQSLLELHKLATEKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI_PACLE (Ferritin OS=Pacifastacus leniusculus PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMP-LSEFDHAEKGDALYA 627
            S  RH + +DCE  IN+QIN+E+  SYVY +M  YFDRD+++L G                 KLM+YQNKRG ++ LQ+I  P L E+ +    DAL A
Sbjct:    3 SQIRHNYHEDCEP-INKQINLEFYASYVYMSMGHYFDRDDISLPGASKFFKDSSDEEREHGQKLMKYQNKRGARIVLQAIAAPSLQEWGNLH--DALQA 98          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_RAT (Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 48/133 (36.09%), Postives = 59/133 (44.36%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P    D  +    L AM                 HK+A   +D  L
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSCYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP----DRDDWESGLNAMRCALHLEKSVNQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH1_SCHMA (Ferritin-1 heavy chain OS=Schistosoma mansoni GN=SCM-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1
Query:  331 LSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMP 582
            +SL R  + ++CEA +N+QIN+E   SYVY  M  +F+RD+VAL G                 KLM YQN RGG++ LQ I  P
Sbjct:    1 MSLCRQNYHEECEAGVNKQINMELYASYVYMTMAFHFNRDDVALNGFYKFFLNESEEERQHAIKLMTYQNMRGGRIVLQDISAP 84          
The following BLAST results are available for this feature:
BLAST of CX294952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
FRIH_FELCA7.167e-1336.84Ferritin heavy chain OS=Felis catus GN=FTH1 PE=2 S... [more]
FRIH_ECHGR7.167e-1336.72Ferritin heavy chain OS=Echinococcus granulosus PE... [more]
FRIH_CANFA7.167e-1336.84Ferritin heavy chain OS=Canis familiaris GN=FTH1 P... [more]
FRIH3_XENLA7.167e-1335.94Ferritin heavy chain, oocyte isoform OS=Xenopus la... [more]
FRIH_TRIVU9.361e-1336.84Ferritin heavy chain OS=Trichosurus vulpecula GN=F... [more]
FRIH_SALSA9.361e-1336.00Ferritin, heavy subunit OS=Salmo salar PE=2 SV=1[more]
FRIH_BOVIN9.361e-1336.09Ferritin heavy chain OS=Bos taurus GN=FTH1 PE=2 SV... [more]
FRI_PACLE2.085e-1243.43Ferritin OS=Pacifastacus leniusculus PE=1 SV=1[more]
FRIH_RAT2.085e-1236.09Ferritin heavy chain OS=Rattus norvegicus GN=Fth1 ... [more]
FRIH1_SCHMA2.085e-1242.86Ferritin-1 heavy chain OS=Schistosoma mansoni GN=S... [more]

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Properties
Property NameValue
Genbank descriptionC05065A03SK DroRLeaf1 Citrus clementina cDNA clone C05065A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294952 ID=CX294952; Name=CX294952; organism=Citrus clementina; type=EST; length=717bp
TTGCGTTTCACTTCATTTGCTCCTCTTTTCAAATCTTTTTGTCCTTGAAA
TCCGTAAACAAAAACATTTGAAAAAAAAAAAATGTTGCTCGAAGCATCTT
CAGCTTTATCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTT
TCCTCTGTTTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTC
ACCGAAAAATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACA
ACAGCCCCTTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAG
GAGCTCGATTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAA
GTTCACTGACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAAT
ACAATGTCTCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGAC
AATGTCGCGCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGA
GGAAAGAGAGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAG
GTAAAGTGAAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCAT
GCTGAGAAAGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGA
GAAGCTAACAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCCACAAGA
ACCATGATGTGCAGTTG
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