CX294952

Overview
NameCX294952
Unique NameCX294952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1257 contig Ccv1_Contig1257:18..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI1_RANCA (Ferritin, higher subunit OS=Rana catesbeiana PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 45/128 (35.16%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  F  DCEAAIN  +N+E   SY Y +M  YFDRD++AL  +                KLM+ QNKRGG++ LQ +  P    +  E G+ L AM+                HKV     D  L
Sbjct:    3 SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDVKKP----ERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHL 126          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIM_SALSA (Ferritin, middle subunit OS=Salmo salar PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 45/128 (35.16%), Postives = 57/128 (44.53%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  +  DCE AIN  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QNKRGG++ LQ I  P    +  E G+ L AM+                HK+A    D  L
Sbjct:    3 SQIRQNYHHDCERAINRMINMEMFASYTYTSMAFYFSRDDVALPGFAHFFKENSEEEREHADKLLSFQNKRGGRILLQDIKKP----ERDEWGNGLEAMQCALQLEKNVNQALLDLHKIASDKVDPHL 126          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FTMT_HUMAN (Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 48/108 (44.44%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  316 PTVPQL--SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAME 633
            PT P    S  R  F  D EAAIN QIN+E   SYVY +M  YF RD+VAL                   KLM  QN+RGG+++LQ I  P  E D  E G  L+AME
Sbjct:   58 PTGPAAGPSRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDIKKP--EQDDWESG--LHAME 161          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_SHEEP (Ferritin heavy chain OS=Ovis aries GN=FTH1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 47/133 (35.34%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  319 TVPQLSLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            T    S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  +LM+ QN+RG ++ LQ I  P    D  +  + L AME                HK+A + +D  L
Sbjct:    2 TTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAERLMKLQNQRGARIFLQDIKKP----DRDDWENGLNAMECALCLERSVNQSLLELHKLATEKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_PIG (Ferritin heavy chain OS=Sus scrofa GN=FTH1 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 49/128 (38.28%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S  R  +  D EAAIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ Q +RG ++ LQ I+ P  E D  E G  L AME                HK+A   +D  L
Sbjct:    7 SQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHGGRGHAEKLMKLQTQRGARIFLQDIMKP--ERDDWENG--LTAMEFALHVVKNVYQSLLELHKLATDKNDPHL 130          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRI3_RANCA (Ferritin, lower subunit OS=Rana catesbeiana PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMP 582
            S  R  F  DCEA +N  +N++++ SYVY +M +YF+RD+VAL                   KL+EYQN+RGG+V LQS+  P
Sbjct:    3 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKP 85          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH2_SCHMA (Ferritin-2 heavy chain OS=Schistosoma mansoni GN=SCM-2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 47/129 (36.43%), Postives = 58/129 (44.96%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPL-SEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            S AR  F  +CE AIN+QINVE   +Y Y A F YFDRD+V+                    KL +YQNKR G+V+   I  P  +EF   E      AM                 H+VA KN+D  L
Sbjct:    4 SRARQSFATECENAINKQINVELQAAYDYMAFFTYFDRDDVSFPKAAEFFRKASHEEREHAEKLAKYQNKRVGRVQYSDINGPTKTEFSSLED-----AMNTALGMEKAVSKSLLELHEVASKNNDPAL 127          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIM_TRENE (Ferritin, middle subunit OS=Trematomus newnesi PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 42/125 (33.60%), Postives = 56/125 (44.80%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHD 708
            S  R  +  DCEAA+N  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QN RGG++ LQ I  P    +  E G  L A++                HK+A  + D
Sbjct:    3 SQVRQNYHRDCEAAVNRMINMELFASYSYTSMAFYFSRDDVALPGFAHFFKENSEEEREHADKLLTFQNSRGGRIFLQDIKKP----ERDEWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTD 123          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIML_PAGBE (Ferritin, liver middle subunit OS=Pagothenia bernacchii PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 42/125 (33.60%), Postives = 56/125 (44.80%), Query Frame = 1
Query:  334 SLARHKFTDDCEAAINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHD 708
            S  R  +  DCEAA+N  IN+E   SY Y +M  YF RD+VAL G                 KL+ +QN RGG++ LQ I  P    +  E G  L A++                HK+A  + D
Sbjct:    3 SQVRQNYHRDCEAAVNRMINMELFASYSYTSMAFYFSRDDVALPGFAHFFKENSDEEREHADKLLTFQNSRGGRIFLQDIKKP----ERDEWGSGLDALQSSLQLEKNVNQALLDLHKIASDHTD 123          
BLAST of CX294952 vs. ExPASy Swiss-Prot
Match: FRIH_RABIT (Ferritin heavy chain (Fragment) OS=Oryctolagus cuniculus GN=FTH1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 46/115 (40.00%), Postives = 56/115 (48.70%), Query Frame = 1
Query:  373 AINEQINVEYNVSYVYHAMFAYFDRDNVALKGLXXXXXXXXXXXXXXXXKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKVAHKNHDVQL 717
            AIN QIN+E   SYVY +M  YFDRD+VALK                  KLM+ QN+RGG++ LQ I  P  E+D  E G  L AME                HK+A   +D  L
Sbjct:    1 AINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKP--EYDDWESG--LNAMECALHLEKSVNQSLLELHKLATDKNDPHL 111          
The following BLAST results are available for this feature:
BLAST of CX294952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
FRI1_RANCA2.085e-1235.16Ferritin, higher subunit OS=Rana catesbeiana PE=1 ... [more]
FRIM_SALSA2.724e-1235.16Ferritin, middle subunit OS=Salmo salar PE=2 SV=1[more]
FTMT_HUMAN4.646e-1244.44Ferritin, mitochondrial OS=Homo sapiens GN=FTMT PE... [more]
FRIH_SHEEP4.646e-1235.34Ferritin heavy chain OS=Ovis aries GN=FTH1 PE=1 SV... [more]
FRIH_PIG4.646e-1238.28Ferritin heavy chain OS=Sus scrofa GN=FTH1 PE=1 SV... [more]
FRI3_RANCA4.646e-1242.17Ferritin, lower subunit OS=Rana catesbeiana PE=1 S... [more]
FRIH2_SCHMA2.306e-1136.43Ferritin-2 heavy chain OS=Schistosoma mansoni GN=S... [more]
FRIM_TRENE3.933e-1133.60Ferritin, middle subunit OS=Trematomus newnesi PE=... [more]
FRIML_PAGBE3.933e-1133.60Ferritin, liver middle subunit OS=Pagothenia berna... [more]
FRIH_RABIT3.933e-1140.00Ferritin heavy chain (Fragment) OS=Oryctolagus cun... [more]

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Properties
Property NameValue
Genbank descriptionC05065A03SK DroRLeaf1 Citrus clementina cDNA clone C05065A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294952 ID=CX294952; Name=CX294952; organism=Citrus clementina; type=EST; length=717bp
TTGCGTTTCACTTCATTTGCTCCTCTTTTCAAATCTTTTTGTCCTTGAAA
TCCGTAAACAAAAACATTTGAAAAAAAAAAAATGTTGCTCGAAGCATCTT
CAGCTTTATCCCTCGTGAGCCCCCAAAAGGAGGCTCTAAATCCTCTGTTT
TCCTCTGTTTCTTCAGCCTTTCCGCCGAACCCGAGTCTCCGTTTTTCTTC
ACCGAAAAATGATAACGGCGTGGTGGTTTGCGCCTCTAAAAATGCTAACA
ACAGCCCCTTAACCGGCGTCATTTTTGCTCCCTTTGAAGAGGTGAAAAAG
GAGCTCGATTTGGTCCCAACTGTGCCTCAACTGTCTCTTGCCAGACACAA
GTTCACTGACGATTGTGAGGCCGCAATCAACGAGCAGATCAATGTGGAAT
ACAATGTCTCCTATGTGTATCATGCCATGTTTGCTTACTTTGACAGAGAC
AATGTCGCGCTCAAGGGTCTCGCCAAGTTTTTCAAGGAATCAAGTGAAGA
GGAAAGAGAGCATGCTGAGAAATTGATGGAATATCAGAACAAACGAGGAG
GTAAAGTGAAGCTGCAATCAATATTGATGCCTCTCTCTGAGTTTGATCAT
GCTGAGAAAGGAGATGCTTTGTATGCCATGGAGCTTACGCTGTCTCTGGA
GAAGCTAACAAATGAGAAACTCCTCAACTTGCACAAGGTGGCCCACAAGA
ACCATGATGTGCAGTTG
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