CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.747e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  249 SLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S KVKE LF  +SE+Q+V V ++  +GK++ LDG+V +TEKDE  Y +MI H+P+   P+ K             RE+ R+ S++ +D+ E
Sbjct:   16 SFKVKEHLFSEQSEFQKVDVLDTYEFGKLMTLDGLVMVTEKDEFIYHDMIVHVPMAVNPNIKNVLIIGGGDGGTARELMRYQSIKHVDMVE 106          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_THEP1 (Spermidine synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=speE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  252 LKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +K+  +++ G+S+ Q + +FE+   G V  LDGI   TEKDE  Y EM+AH+P+   P+PK             RE+ +HDSVE   +CE
Sbjct:   32 MKINRMIYSGQSDIQRIDIFENPDLGVVFSLDGITMTTEKDEFMYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAVLCE 121          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_CALS8 (Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  210 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE 503
            ++F     P    + K+ + ++  K++YQ++ + E+  +GK+LVLDG VQ T  DE  Y E+IAH+PL + P+PK             REI +H+ VE
Sbjct:    6 LWFTEQQTPDLGFTCKITKTIYTAKTKYQDLAILETKQFGKMLVLDGAVQTTIVDEFCYHELIAHVPLFTHPNPKKVAVIGGGDGGVIREILKHEEVE 103          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_ANATD (Spermidine synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=speE PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  210 MYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVE 503
            ++F     P    + K+ + ++  K++YQ++ + E+  +G++LVLDG VQ T  DE  Y E+I+H+PL + P+PK             REI +HD VE
Sbjct:    6 LWFTEQQTPDLGFTCKITKTIYTAKTQYQDLAILETKQFGRMLVLDGAVQTTIADEFCYHELISHVPLFTHPNPKKVAVIGGGDGGVIREILKHDEVE 103          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPP (Spermidine synthase OS=Yersinia pestis (strain Pestoides F) GN=speE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPN (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=speE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPG (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=speE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPE (Spermidine synthase OS=Yersinia pestis GN=speE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YERPA (Spermidine synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=speE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +LF+ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH ++E I + E
Sbjct:   21 VENVLFREKTEHQDLVIFENPELGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHKNIEQITMVE 108          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SERP5 (Spermidine synthase OS=Serratia proteamaculans (strain 568) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.347e-13
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  258 VKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            V+ +L++ K+E+Q++++FE+   G+V+ LDG+VQ TE+DE  Y EM+ H+PL +    K             RE+SRH  VE I + E
Sbjct:   21 VENVLYREKTEHQDLVIFENPVLGRVMALDGVVQTTERDEFIYHEMMTHVPLLAHGQAKKVLIIGGGDGAMLREVSRHQGVEQITMVE 108          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPEE_ALKMQ3.747e-1339.56Spermidine synthase OS=Alkaliphilus metalliredigen... [more]
SPEE_THEP14.893e-1338.89Spermidine synthase OS=Thermotoga petrophila (stra... [more]
SPEE_CALS84.893e-1335.71Spermidine synthase OS=Caldicellulosiruptor saccha... [more]
SPEE_ANATD4.893e-1334.69Spermidine synthase OS=Anaerocellum thermophilum (... [more]
SPEE_YERPP6.391e-1338.64Spermidine synthase OS=Yersinia pestis (strain Pes... [more]
SPEE_YERPN6.391e-1338.64Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_YERPG6.391e-1338.64Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_YERPE6.391e-1338.64Spermidine synthase OS=Yersinia pestis GN=speE PE=... [more]
SPEE_YERPA6.391e-1338.64Spermidine synthase OS=Yersinia pestis bv. Antiqua... [more]
SPEE_SERP58.347e-1338.64Spermidine synthase OS=Serratia proteamaculans (st... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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