CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECOBW (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO8A (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O8 (strain IAI1) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO7I (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO5E (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO57 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O157:H7 GN=sthA PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO55 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO45 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO27 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 61/240 (25.42%), Postives = 105/240 (43.75%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR---APIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR         P   +   SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFPHPRI-YDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ECO24 (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
[Close]
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_SHIB3 (Soluble pyridine nucleotide transhydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 62/243 (25.51%), Postives = 107/243 (44.03%), Query Frame = 1 
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL--NGIYKRLLSNAGV------KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL    N I ++     G       ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGR 271
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
STHA_ECOBW2.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO8A2.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO7I2.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO5E2.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO572.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO552.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO452.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO272.951e-1125.42Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECO242.951e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_SHIB33.855e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Sh... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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