CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: MERA_SERMA (Mercuric reductase (Fragments) OS=Serratia marcescens GN=merA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 55/205 (26.83%), Postives = 93/205 (45.37%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRL-NGIYKRLLS-NAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAI--TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKEL 615
            GGTCV  GCVP KI++  A       ++   G           ++LL ++   +  L +  Y+ +L  N+ + +  GE +     ++ V+  +G +        L+ATG+     PIPG + +   TS EAL  + +P+R  V+G   +A+E A  +  +GS V +L R  L  R  D  +   V       GI +   T   ++
Sbjct:  133 GGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGMPPTPPTILRERLLAQQQARVEELRHAKYEGILDGNSAITVRHGEARFKDDRDLSVSLNEGGERVVMFDRCLVATGASPAMPPIPGLKESPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSQVTILARNTLFFRD-DPSIGEAVTAAFRAEGIKVLEHTQASQV 336          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_ENT38 (Soluble pyridine nucleotide transhydrogenase OS=Enterobacter sp. (strain 638) GN=sthA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 61/243 (25.10%), Postives = 101/243 (41.56%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILR------------LNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIP--GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +  S   E      Y          D  +LL+    +IL               G Y+R       ++ +G+   V  + + +   DG+  + +A+  +IA GSR                SD  LSL   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      + +   ++GV      G+++ AD +L+A GR
Sbjct:   42 GGGCTHWGTIPSKALRHAVSRIIEFNQNPLYS---------DHSRLLRSSFADILNHADTVINQQTRMRQGFYER----NHCEILQGDAHFVDEHTLALKCHDGSVETITAEKFVIACGSRPYHPDDVDFSHPRVYDSDSILSLHHEPRHVLIYGAGVIGCEYASIFRGMEVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYERIEACDDGVIMHLKSGKKLKADCLLYANGR 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: STHA_PSESM (Soluble pyridine nucleotide transhydrogenase OS=Pseudomonas syringae pv. tomato GN=sthA PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 58/231 (25.11%), Postives = 96/231 (41.56%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQR-APIPGQELAI-TSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEEIVADVVLFATGR 699
            GG C   G +P K L +      +      +   + E   F +  +L+     I +         +   V ++ G G       V V   +G      A  I+IATGSR  R A I      I  SD  LSL   P++ ++ G G I  E+ASI+ G+G  V+L+  ++  L   D E+   ++ +     + +      + +   + GV      G++I AD +L+  GR
Sbjct:   41 GGNCTHLGTIPSKALRHSVKQIIQFNTNPMFR-AIGEPRWFSFPDVLKNAEMVISKQVASRTSYYARNRVDVFFGTGSFADETSVNVVCANGVVEKLVANQIIIATGSRPYRPADIDFSHKRIYDSDTILSLGHTPRKLIIYGAGVIGCEYASIFSGLGVLVELVDNRDQLLSFLDSEISQALSYHFSNNNVMVRHNEEYERVEGLDNGVVLHLKSGKKIKADALLWCNGR 270          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 61/238 (25.63%), Postives = 108/238 (45.38%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGEL-EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA---ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-RITDHG--EEIVADVVLFATGRAP 705
            GG C+  GC+P K L+  A       +DA+++G       D+       +K  E  R+ G++  +  N   +++ G G     N + V   DG   S +  + +IATGS  +   +PG  L+   +T +E +   ELPK  ++ G G I +EF  + +  G  V ++      L   D ++   + +  +  G+ +   T ++ +      V   +T  G  +E+ A+ VL A G AP
Sbjct:   38 GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEG-RVAGVHFLMKKNKITEIH-GYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRL--VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAP 271          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 61/238 (25.63%), Postives = 108/238 (45.38%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGEL-EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA---ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVK-RITDHG--EEIVADVVLFATGRAP 705
            GG C+  GC+P K L+  A       +DA+++G       D+       +K  E  R+ G++  +  N   +++ G G     N + V   DG   S +  + +IATGS  +   +PG  L+   +T +E +   ELPK  ++ G G I +EF  + +  G  V ++      L   D ++   + +  +  G+ +   T ++ +      V   +T  G  +E+ A+ VL A G AP
Sbjct:   38 GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEG-RVAGVHFLMKKNKITEIH-GYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRL--VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAP 271          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
MERA_SERMA3.855e-1126.83Mercuric reductase (Fragments) OS=Serratia marcesc... [more]
STHA_ENT385.034e-1125.10Soluble pyridine nucleotide transhydrogenase OS=En... [more]
STHA_PSESM8.587e-1125.11Soluble pyridine nucleotide transhydrogenase OS=Ps... [more]
DLDH_MYCTU8.587e-1125.63Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO8.587e-1125.63Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
back to top