CX295016

Overview
NameCX295016
Unique NameCX295016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: GSHR_RAT (Glutathione reductase (Fragment) OS=Rattus norvegicus GN=Gsr PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 71/210 (33.81%), Postives = 111/210 (52.86%), Query Frame = 1
Query:   34 GCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV-GPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG----INLHPRTTIKELIKSEEGVK 639
            GCVPKK++   A     + D   YG++ + K  F+W  + +K+   + RLN IY+  L+ + +++  G      GP      +++G K  ++A HILIATG   +      IPG  L ITSD    LE+LP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  + +     LE  G    + +   + +KE+ K+  G++
Sbjct:    4 GCVPKKVMWNTAVHSEFIHDHVDYGFQ-NCKSKFNWHVIKEKRDAYVSRLNNIYQNNLTKSHIEVIHGYATFRDGPQPT--AEVNGKK--FTAPHILIATGGVPTVPHENQIPGASLGITSDGFFQLEDLPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRSFDSLISSNCTEELENAGGVEVLTVKKFSQVKEVKKTSSGLE 208          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 84/243 (34.57%), Postives = 122/243 (50.21%), Query Frame = 1
Query:    4 SAEGGTCVIRGCVPKKILVYGASFGGELEDARSY------GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI-PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGE--EIVADVVLFATGRAP 705
            +A GGTC+  GC+P K L++ A    E   AR Y      G +V      D  + ++ K   + RL      LL   GV + +G  +I+    V V    G       +H+L+A GS++   PI P     I+S EAL+   LPKR VV+GGGYI +E  + +R +G  V ++  +   L G+D+E+   VA+ L   G+ L+   ++  L  SE GV+     GE  EI AD VL A GR P
Sbjct:   38 AALGGTCLNVGCIPSKALIHAAE---EYLKARHYASRSALGIQVQAP-SIDIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWARILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGKVISSTEALAPGSLPKRLVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSL--LGPSENGVRVRDGAGEEREIAADQVLVAVGRKP 274          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH1_BACST (Dihydrolipoyl dehydrogenase OS=Bacillus stearothermophilus GN=pdhD PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 72/235 (30.64%), Postives = 116/235 (49.36%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHGEE---IVADVVLFATGRAP 705
            GG C+  GC+P K L+  +    + + +   G +  E +  D+ K+ + K   + +L G  + LL    V++ +GE   V  N V V   D  + +Y+ K+ +IATGSR    P        + S  AL+L E+PK  VV+GGGYI +E  + +   G+ V +L      L GF+ +M A++ + L+ +G+ +      K   + E+GV    +   E   I AD VL   GR P
Sbjct:   44 GGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA-ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQ-TYTFKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRP 276          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_CANFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Canis familiaris GN=DLD PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.179e-22
Identity = 76/244 (31.15%), Postives = 120/244 (49.18%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRITDHG------EEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  + +K++++K+  +  L G    L     V    G GKI G N+V   + DG+      K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++  G      E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVIDTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 76/244 (31.15%), Postives = 118/244 (48.36%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  + +K++++K   +  L G    L     V    G GKI G N+V  T  DG+      K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHLAHGKDFASRGIEIPE-VRLNLEKMMEQKRSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATTADGSTQVIGTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 75/244 (30.74%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  + +K++++K   +  L G    L     V    G GKI G N+V  T+ DG+      K+IL+ATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEIPE-VRLNLEKMMEQKHSAVKALTGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSTQVIDTKNILVATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQRQGFKFKLNTKVTGATKKSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_MACFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 76/244 (31.15%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  +  K++++K+  +  L G    L     V    G GKI G N+V  T++DG       K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVIHVNGYGKITGKNQVTATKVDGGTQVVDTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_CRIGR (Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 76/244 (31.15%), Postives = 119/244 (48.77%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +       D  S G E+ E +  + +K++++K+  +  L G    L     V    G GKI G N+V  T+ DG+      K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHLAHGRDFASRGIELSE-VRLNLEKMMEQKSSAVKALIGGIAHLFKQNKVVHVNGFGKITGKNQVTATKADGSSQVIGTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQKQGFKFKLNTKVTGATKRSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_PONAB (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 76/244 (31.15%), Postives = 118/244 (48.36%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  +  K++++K+  +  L G    L     V    G GKI G N+V  T+ DG       K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEV--TPFPGIMIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 317          
BLAST of CX295016 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 75/244 (30.74%), Postives = 121/244 (49.59%), Query Frame = 1
Query:   13 GGTCVIRGCVPKKILVYGASFG--GELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEEGVKRIT------DHGEEIVADVVLFATGRAP 705
            GGTC+  GC+P K L+  + +      +D  S G E+ E +  + +K++++K++ +  L G    L     V    G GKI G N+V  T+ DG+    + K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  +     +   G D E+     R L+ +G      T +    K  +G   ++         E I  DV+L   GR P
Sbjct:   77 GGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSE-VRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKITGKNQVTATKADGSTEVINTKNILIATGSEV--TPFPGITIDEDTVVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKFKLNTKVIGATKKSDGNIDVSIEAASGGKAEVITCDVLLVCIGRRP 317          
The following BLAST results are available for this feature:
BLAST of CX295016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
GSHR_RAT9.780e-2333.81Glutathione reductase (Fragment) OS=Rattus norvegi... [more]
DLDH1_PSEAE1.277e-2234.57Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
DLDH1_BACST1.668e-2230.64Dihydrolipoyl dehydrogenase OS=Bacillus stearother... [more]
DLDH_CANFA2.179e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Cani... [more]
DLDH_RAT3.716e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
DLDH_MOUSE3.716e-2230.74Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH_MACFA4.854e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Maca... [more]
DLDH_CRIGR4.854e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Cric... [more]
DLDH_PONAB6.339e-2231.15Dihydrolipoyl dehydrogenase, mitochondrial OS=Pong... [more]
DLDH_PIG6.339e-2230.74Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionC05065F09SK DroRLeaf1 Citrus clementina cDNA clone C05065F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295016 ID=CX295016; Name=CX295016; organism=Citrus clementina; type=EST; length=706bp
GATTCGGCCGAGGGTGGAACCTGTGTCATTCGTGGTTGTGTACCCAAAAA
GATATTGGTCTATGGAGCATCATTTGGAGGTGAACTTGAGGATGCAAGGA
GTTATGGATGGGAGGTACACGAGAAAATTGACTTCGACTGGAAAAAACTT
CTGCAAAAGAAGACAGATGAGATACTCAGATTAAATGGAATTTACAAGCG
ATTATTATCTAATGCTGGGGTAAAATTATATGAAGGGGAGGGAAAGATAG
TTGGTCCAAATGAAGTTGAGGTCACACAACTAGATGGCACTAAGTTAAGT
TACTCAGCAAAGCACATATTGATCGCAACTGGAAGTAGGGCTCAACGTGC
TCCTATTCCTGGCCAGGAGCTGGCTATAACCTCTGACGAGGCATTGAGCT
TGGAAGAATTACCCAAGCGTGCTGTGGTGCTTGGTGGAGGGTACATTGCT
GTTGAGTTTGCTTCCATATGGCGAGGGATGGGTTCTACTGTGGATCTATT
ATTTAGAAAGGAACTTCCATTAAGAGGGTTTGATGATGAAATGCGGGCAG
TAGTTGCCAGAAATCTGGAAGGGAGGGGAATTAATTTGCACCCGAGGACT
ACCATAAAGGAGTTGATTAAGTCAGAGGAGGGTGTAAAACGTATTACAGA
TCATGGTGAAGAGATTGTTGCAGATGTTGTACTCTTTGCCACTGGCAGGG
CACCTA
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