CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.534e-55
Identity = 117/247 (47.37%), Postives = 154/247 (62.35%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGD----RLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLP G+ NVV GYG   GA L  H  V K+S TG   TG+ V  LA  S +K  T+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V   ++D FVE+   R  +  +G+P     + GP +   Q EKV+ YI  G +  A L CGG+    +  + G+FV+PTVF+ V D M IA++EIFGPV S+LKF   D+VI RAN T FGLAAGVFT+    A+ ++  L+AGT WI
Sbjct:  194 AGLPDGLFNVVQGYGDV-GAGLVGHDVVAKVSVTGSVPTGRKVLSLAG-SKMKHATMELGGKSPLIVFDDADIENAIGGAMLGNFYSTGQICSNGTRVFVQSGIHDRFVERLVERTKKIRIGNPLDPETQMGPLVSKAQHEKVVGYIGIGKQDGAVLACGGNVPSLQGFDGGFFVEPTVFTGVTDTMRIAREEIFGPVMSVLKFDGEDEVIDRANDTEFGLAAGVFTRDLPRAHRVIAELQAGTCWI 438          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: FTHFD_PONAB (10-formyltetrahydrofolate dehydrogenase OS=Pongo abelii GN=ALDH1L1 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.615e-55
Identity = 106/245 (43.27%), Postives = 157/245 (64.08%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFK--ETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV+NV+ G G   G  L+ H DV K+ FTG  + GK + +  A SN+K V+LELGGKSP IIF D D+++AV++   ++F+N+G+ C A  R +V + ++DEFV +      +  VGDP     + GPQ       K++ Y + G++  ATL CGG+++   G+F +PTVF+DV+D M IA++E FGPV  I +F   + D V+ RAN T FGLA+GVFT+  + A  +   L+AGTV++
Sbjct:  616 AGIPKGVVNVLPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCAISNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHDEFVRRVVEEVRKMKVGDPLDRDTDHGPQNHHAHLMKLMEYCQRGVKEGATLVCGGNQVPRPGFFFEPTVFTDVEDHMFIAKEESFGPVMIISRFADGDVDTVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFV 860          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 106/244 (43.44%), Postives = 150/244 (61.48%), Query Frame = 2
Query:    5 GLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGN--RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            GLPPGVLN+++G GP AGA L SH DVDK++FTG   TG  V   AA+  +KPVTLELGGKSP ++F+D D+D+ VE   F  F+  GQ C A SR  VHE +  EFV+K         + DPF+ G   GP I   Q++K++++I +     AT+  GG R  +  +GY+++PT+ +D+   M I ++E+FGPV  +  F   D+ I  AN T +GLAA VF+   +    + +AL  G VW+
Sbjct:  202 GLPPGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQL-VKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILYGGSRPEHLKKGYYIEPTIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAIALANDTEYGLAAAVFSNDLERCERITKALEVGAVWV 444          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 109/243 (44.86%), Postives = 158/243 (65.02%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG P GV+N++ G+G  AG AL +H  VDK++FTG  + GK +   AAKS +K VTLELGGKSP I+  DA++ +A+  A   + +NQGQ CCAGSR ++H+  YDE V++  + A     G       + GP +  EQ E+VL YI+ G +  A    GG      GYFV PTVF++V+D+M IA++EIFGPV + + ++  D+VI RAN + +GLAAG++T++   A+ +   L+AGTVW+
Sbjct:  210 AGFPAGVINIIPGFGEDAGEALTNHEAVDKIAFTGSTEIGKKIMSTAAKS-IKRVTLELGGKSPNILLPDANLKKAIPGALNGVMFNQGQVCCAGSRVFIHKDQYDEVVDEMASYAESLRQGAGLHKDTQIGPLVSKEQHERVLSYIQKGKDEGAKAVTGGSCPFEAGYFVAPTVFANVEDEMTIAKEEIFGPVLTAIPYETVDEVIERANHSEYGLAAGLWTENVKQAHYIADRLQAGTVWV 451          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 115/247 (46.56%), Postives = 151/247 (61.13%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NV++G G   G  L  H  ++K+SFTG  DTGK V   A+ S+LK VT+ELGGKSP II DDAD+D+A + A  A FY+ GQ C  G+R +V   +   F  K   R  R  VG+P       GP +     E VL YI  G E  A + CGG+RL +    +G FV PTVF+D  DDM I ++EIFGPV +IL ++  ++VIRRAN T FGLAAG+ T+  + A+ ++  L AG  WI
Sbjct:  195 AGVPNGVFNVLTGSGREVGTWLTEHPRIEKISFTGGTDTGKKVMASASASSLKDVTMELGGKSPLIICDDADLDRAADTAMMANFYSSGQVCTNGTRVFVPSHLKAAFEAKIVERVARIRVGNPEDENTNFGPLVSFPHMESVLGYIAKGKEEGARVLCGGERLTDGEFAKGAFVAPTVFTDCTDDMTIVREEIFGPVMAILSYETEEEVIRRANDTDFGLAAGIVTRDLNRAHRVIHQLEAGICWI 441          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_BURXL (Betaine aldehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=betB PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.872e-55
Identity = 118/248 (47.58%), Postives = 154/248 (62.10%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRL-----GNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NVV G G   GA LA+H D++K+SFTG  +TGK V  LA  S+LK VT+ELGGKSP ++FDDAD+++A ++A  A F++ GQ C  G+R +V   V + F      R  R  VG P  +    GP     Q +KVL YI SG +  A L  GG RL     GN G +V+PTVF+   DDM I ++EIFGPV SIL F + D+ I RAN+T +GLAAGV T +   A+ ++  L AG  WI
Sbjct:  195 AGVPAGVFNVVQGDG-RVGAMLAAHPDIEKISFTGGVETGKKVMSLAGASSLKEVTMELGGKSPLLVFDDADLERAADIAMSANFFSSGQVCTNGTRVFVQRGVLERFEALVLERVKRIRVGAPTNAATNFGPLASAAQLQKVLGYIESGKQEGARLMAGGKRLTEGHFGN-GQYVEPTVFTGCHDDMRIVREEIFGPVMSILVFDDEDEAIARANRTAYGLAAGVVTGNLARAHRVIHRLEAGICWI 440          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: FTHFD_RAT (10-formyltetrahydrofolate dehydrogenase OS=Rattus norvegicus GN=Aldh1l1 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 104/245 (42.45%), Postives = 158/245 (64.49%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFK--ETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV+N++ G G   G  L+ H DV K+ FTG  + GK + +  A SN+K V+LELGGKSP IIF D D+++AV++   ++F+N+G+ C A  R +V E ++++FV+K      +  +G+P +     GPQ       K++ Y + G++  ATL CGG+++   G+F QPTVF+DV+D M IA++E FGP+  I +F   + D V+ RAN T FGLA+GVFT+  + A  +   L+AGTV+I
Sbjct:  616 AGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSCALSNVKKVSLELGGKSPLIIFADCDLNKAVQMGMSSVFFNKGENCIAAGRLFVEESIHNQFVQKVVEEVEKMKIGNPLERDTNHGPQNHEAHLRKLVEYCQRGVKEGATLVCGGNQVPRPGFFFQPTVFTDVEDHMYIAKEESFGPIMIISRFADGDVDAVLSRANATEFGLASGVFTRDINKALYVSDKLQAGTVFI 860          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 113/243 (46.50%), Postives = 152/243 (62.55%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLPPG+ NVV G G   GAAL S   V K+S TG   TG+ V   AA+  ++ VT+ELGGKSP I+FDDAD++ A+  A    FY+ GQ C  G+R +V + + + F+ +   RA    +GDP    V+ GP + P Q EKVL YI         L CGG+   + G +VQPTVF+DV D M +A++E+FGPV ++L F+  ++VI RAN T FGLAAGVFT     A+ ++  L+AGT WI
Sbjct:  194 AGLPPGLFNVVQGRG-AVGAALVSDSRVAKVSLTGSVPTGRRVYAAAAEG-VRHVTMELGGKSPLIVFDDADLESAIGAAMLGNFYSSGQICSNGTRVFVQKGIKEAFLARLAERADAIQMGDPLDPEVQMGPLVSPAQLEKVLSYIEKARAEGGRLVCGGEASVSPGCYVQPTVFADVTDGMTLAREEVFGPVMAVLDFETEEEVIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWI 434          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_PSEAE (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa GN=betB PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 113/247 (45.75%), Postives = 149/247 (60.32%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NV++G G   G  L  H  ++K+SFTG   TGK V   A+ S+LK VT+ELGGKSP IIF DAD+D+A ++A  A F++ GQ C  G+R ++H      F  K   R  R  +GDP       GP +     E VL YI SG    A L CGG+R+ +    +G +V PTVF+D +DDM I ++EIFGPV SIL + + D+ IRRAN T +GLAAGV T+    A+  +  L AG  WI
Sbjct:  195 AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWI 441          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: BETB_PSEA8 (Betaine aldehyde dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58) GN=betB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 113/247 (45.75%), Postives = 149/247 (60.32%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGN----RGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NV++G G   G  L  H  ++K+SFTG   TGK V   A+ S+LK VT+ELGGKSP IIF DAD+D+A ++A  A F++ GQ C  G+R ++H      F  K   R  R  +GDP       GP +     E VL YI SG    A L CGG+R+ +    +G +V PTVF+D +DDM I ++EIFGPV SIL + + D+ IRRAN T +GLAAGV T+    A+  +  L AG  WI
Sbjct:  195 AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASASSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQARFEAKVLERVQRIRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDDEDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWI 441          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BETB_RHILO3.534e-5547.37Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
FTHFD_PONAB4.615e-5543.2710-formyltetrahydrofolate dehydrogenase OS=Pongo a... [more]
BADH_SPIOL6.028e-5543.44Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
ALDH4_BACSU6.028e-5544.86Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
BETB_PSEPF7.872e-5546.56Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_BURXL7.872e-5547.58Betaine aldehyde dehydrogenase OS=Burkholderia xen... [more]
FTHFD_RAT1.343e-5442.4510-formyltetrahydrofolate dehydrogenase OS=Rattus ... [more]
BETB_RHOS51.343e-5446.50Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_PSEAE1.343e-5445.75Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]
BETB_PSEA81.343e-5445.75Betaine aldehyde dehydrogenase OS=Pseudomonas aeru... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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