CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34
Identity = 93/248 (37.50%), Postives = 134/248 (54.03%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI--VGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV KA A AM++   VG+ F+ G  QGP I+ +  EKV + +   +   AT+  GG R      F +PT+  +V  DML   +E FGP+  ++KF   ++ I  AN    GLA   +++       +   L  G V +
Sbjct:  247 AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFV-KAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGV 492          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: SSDH_GORGO (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Gorilla gorilla gorilla GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34
Identity = 93/248 (37.50%), Postives = 134/248 (54.03%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTA---GAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI--VGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG+P GV NV+      A   G A+ +   V K+SFTG   TGKI+   AA S +K V++ELGG +PFI+FD A+VDQAV  A  + F N GQ C   ++  V   ++D FV KA A AM++   VG+ F+ G  QGP I+ +  EKV + +   +   AT+  GG R      F +PT+  +V  DML   +E FGP+  ++KF   ++ I  AN    GLA   +++       +   L  G V +
Sbjct:  247 AGIPSGVYNVIPCSRKNAKEVGEAICTDPLVSKISFTGSTTTGKILLHHAANS-VKRVSMELGGLAPFIVFDSANVDQAVAGAMASKFRNTGQTCVCSNQFLVQRGIHDAFV-KAFAEAMKKNLRVGNGFEEGTTQGPLINEKAVEKVEKQVNDAVSKGATVVTGGKRHQLGKNFFEPTLLCNVTQDMLCTHEETFGPLAPVIKFDTEEEAIAIANAADVGLAGYFYSQDPAQIWRVAEQLEVGMVGV 492          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_GEOSW (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus sp. (strain WCH70) GN=rocA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 86/247 (34.82%), Postives = 124/247 (50.20%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVW 727
            AGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK +     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  + E VYD+ + +      +  VGDP       GP ID   + K++ YI  G +    L  GG+   ++G+F+QPTVF+DV  +  I Q+EIFGPV +  K K+ D  +  AN T +GL   V +++             G ++
Sbjct:  224 AGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDGIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNRVVELTKQLKVGDPADQSTFMGPVIDQSAYNKIMEYIEIG-KKEGRLMTGGEGDDSKGFFIQPTVFADVDPNARIMQEEIFGPVVAFTKAKDFDHALEIANNTEYGLTGAVISRNRANLEKAREEFHVGNLY 469          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ABDH_SHIDS (Gamma-aminobutyraldehyde dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 86/244 (35.25%), Postives = 124/244 (50.82%), Query Frame = 2
Query:   11 PPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNAT----LECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            P GV+NV+ G G T G  L  H  V  +S TG   TG+ +    A S +K   +ELGGK+P I+FDDA+++  VE      +YN GQ C A  R Y  + +YD  VEK  A       G P     E GP       E+V + +    E+ AT    +  GG++    GY+  PT+ +    D  I Q E+FGPV S+  F   + V+  AN +++GLA+ V+TK    A+ +   L+ G  W+
Sbjct:  193 PAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPS-IKRTHMELGGKAPVIVFDDANIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVE---EAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWV 432          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ABDH_ECOLU (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 86/244 (35.25%), Postives = 124/244 (50.82%), Query Frame = 2
Query:   11 PPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNAT----LECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            P GV+NV+ G G T G  L  H  V  +S TG   TG+ +    A S +K   +ELGGK+P I+FDDAD++  VE      +YN GQ C A  R Y  + +YD  VEK  A       G P     E GP       ++V + +    E+ AT    +  GG++    GY+  PT+ +    D  I Q E+FGPV S+  F   + V+  AN +++GLA+ V+TK    A+ +   L+ G  W+
Sbjct:  193 PAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPS-IKLTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLDRVSKAVE---EAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTLFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWV 432          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ABDH_ECO5E (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 86/244 (35.25%), Postives = 123/244 (50.41%), Query Frame = 2
Query:   11 PPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNAT----LECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            P GV+NV+ G G T G  L  H  V  +S TG   TG+ +    A S +K   +ELGGK+P I+FDDAD++  VE      +YN GQ C    R Y  + +YD  VEK  A       G P     E GP       E+V + +    E+ AT    +  GG++    GY+  PT+ +    D  I Q E+FGPV S+  F   + V+  AN +++GLA+ V+TK    A+ +   L+ G  W+
Sbjct:  193 PAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPS-IKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTVACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVE---EAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTLFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWV 432          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ABDH_ECO57 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O157:H7 GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 86/244 (35.25%), Postives = 123/244 (50.41%), Query Frame = 2
Query:   11 PPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNAT----LECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            P GV+NV+ G G T G  L  H  V  +S TG   TG+ +    A S +K   +ELGGK+P I+FDDAD++  VE      +YN GQ C    R Y  + +YD  VEK  A       G P     E GP       E+V + +    E+ AT    +  GG++    GY+  PT+ +    D  I Q E+FGPV S+  F   + V+  AN +++GLA+ V+TK    A+ +   L+ G  W+
Sbjct:  193 PAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPS-IKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTVACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKAVE---EAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTLFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWV 432          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ABDH_ESCF3 (Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ydcW PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 84/241 (34.85%), Postives = 120/241 (49.79%), Query Frame = 2
Query:   11 PPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGI-ESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            P GV+NV+ G G T G  L  H  V  +S TG   TG+ +    A S +K   +ELGGK+P I+FDDAD++  VE      +YN GQ C A  R Y  + +YD  VEK  A       G P     E GP       E V + +       +  +  GG++    GY+  PT+ +    D  I Q E+FGPV S+  F   + V+  AN +++GLA+ V+TK    A+ +   L+ G  W+
Sbjct:  193 PAGVINVLFGRGKTVGDPLTGHPKVRMVSLTGSIATGEHIISHTAPS-IKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNAGQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLEHVSKAVEEAKGTGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTAFDNEEQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWV 432          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_GEOTN (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34
Identity = 85/247 (34.41%), Postives = 125/247 (50.61%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVW 727
            AGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK       LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  + E VYD+ + +      +  VGDP +     GP ID   + K++ YI  G +    L  GG+   ++G+F+QPTVF+DV  +  I Q+EIFGPV +  K ++ D  +  AN T++GL   V +++             G ++
Sbjct:  224 AGLPAGVLNYIPGSGAEVGDYLVEHPRTRFISFTGSRDVGIRIYERAAKVQPGQIWLKRVIAEMGGKDAIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLNRVVELTKQLNVGDPAEQATFMGPVIDQGAYNKIMEYIEIG-KQEGRLMTGGEGDDSKGFFIQPTVFADVDPNARIMQEEIFGPVVAFAKARDFDHALEIANNTQYGLTGAVISRNRANLEKARHEFHVGNLY 469          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_GEOKA (1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus GN=rocA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.491e-34
Identity = 85/247 (34.41%), Postives = 124/247 (50.20%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVW 727
            AGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK +     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR  + E VYD+ + +      +  VGDP +     GP ID   + K++ YI  G +    L  GG+    +G+F+QPTVF+DV  +  I Q+EIFGPV +  K ++ D  +  AN T +GL   V +++             G ++
Sbjct:  224 AGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDAIVVDKEADLELAAQSIVASAFGFSGQKCSACSRAIIVEDVYDQVLSRVVELTKQLNVGDPAEQATFMGPVIDQNAYNKIMEYIEIG-KQEGRLMTGGEGDDAKGFFIQPTVFADVDPNARIMQEEIFGPVVAFAKARDFDHALEIANNTEYGLTGAVISRNRANLEKARHEFHVGNLY 469          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSDH_HUMAN1.543e-3437.50Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_GORGO1.543e-3437.50Succinate-semialdehyde dehydrogenase, mitochondria... [more]
ROCA_GEOSW2.016e-3434.821-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ABDH_SHIDS2.016e-3435.25Gamma-aminobutyraldehyde dehydrogenase OS=Shigella... [more]
ABDH_ECOLU2.016e-3435.25Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO5E2.016e-3435.25Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ECO572.016e-3435.25Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ABDH_ESCF32.633e-3434.85Gamma-aminobutyraldehyde dehydrogenase OS=Escheric... [more]
ROCA_GEOTN3.439e-3434.411-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]
ROCA_GEOKA4.491e-3434.411-pyrroline-5-carboxylate dehydrogenase OS=Geobaci... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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