CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ALDY_BACSU (Uncharacterized aldehyde dehydrogenase aldY OS=Bacillus subtilis GN=aldY PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 88/239 (36.82%), Postives = 123/239 (51.46%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAG 718
            AGLP GVLNV+       G  + ++     +SFTG    G+ + E+A ++  K + LELGG +PF +  DADVD+AV+ A F  F +QGQ C   +R  VH+ VYDEFVEK  AR  +   GD        GP I+  Q EK L  I         L   G R+GN    + P VF    ++  IAQ E+F P+ +I+K     + I  AN T +GL++ VFT   +        + +G
Sbjct:  197 AGLPAGVLNVMLTDVKEIGDGMLTNPIPRLISFTGSTAVGRHIGEIAGRA-FKRMALELGGNNPFAVLSDADVDRAVDAAIFGKFIHQGQICMIINRIIVHQDVYDEFVEKFTARVKQLPYGDQTDPKTVVGPLINERQIEKALEIIEQAKTDGIELAVEGKRVGN---VLTPYVFVGADNNSKIAQTELFAPIATIIKAGSDQEAIDMANDTEYGLSSAVFTSDLEKGEKFALQIDSG 431          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAES (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rocA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 86/228 (37.72%), Postives = 121/228 (53.07%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFT 670
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     +  LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ V+DE +EKA     +  +G+  +     GP I+ +QF+K+  YI  G +    LE GG    + GYF++PT+FS ++    I Q+EIFGPV   +K K+ D+ I  AN T +GL   V T
Sbjct:  224 AGLPQGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQQFLKRVIAEMGGKDAIVVDNNVDTDLAAEAIVTSAFGFSGQKCSACSRAIVHQDVHDEILEKAIQLTQKLTLGNT-EENTFMGPVINQKQFDKIKNYIEIG-KKEGKLETGGGTDDSTGYFIEPTIFSGLQSADRIMQEEIFGPVVGFIKVKDFDEAIEVANDTDYGLTGAVIT 449          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAEQ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rocA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 86/228 (37.72%), Postives = 121/228 (53.07%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFT 670
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     +  LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ V+DE +EKA     +  +G+  +     GP I+ +QF+K+  YI  G +    LE GG    + GYF++PT+FS ++    I Q+EIFGPV   +K K+ D+ I  AN T +GL   V T
Sbjct:  224 AGLPQGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQQFLKRVIAEMGGKDAIVVDNNVDTDLAAEAIVTSAFGFSGQKCSACSRAIVHQDVHDEILEKAIQLTQKLTLGNT-EENTFMGPVINQKQFDKIKNYIEIG-KKEGKLETGGGTDDSTGYFIEPTIFSGLQSADRIMQEEIFGPVVGFIKVKDFDEAIEVANDTDYGLTGAVIT 449          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTU (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis GN=gabD1 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:    5 GLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K  AR     VGDP     + GP    +   +V + +     + A + CGG RL   G+F  PTV +D+  DM +  +E+FGPV S+ +    D+ +  AN T FGL +  +T+        +  + AG V+I
Sbjct:  177 GFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTRDETEQRRFIDDIVAGQVFI 416          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCTA (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:    5 GLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K  AR     VGDP     + GP    +   +V + +     + A + CGG RL   G+F  PTV +D+  DM +  +E+FGPV S+ +    D+ +  AN T FGL +  +T+        +  + AG V+I
Sbjct:  177 GFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTRDETEQRRFIDDIVAGQVFI 416          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCPA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium paratuberculosis GN=gabD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   95 SFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K   +     VGDP     + GP       +++ + +   + + ATL CGG  L   G+F  PTV +D+  DM +  +E+FGPV S+ +  + D+ I  AN T FGL +  +T  A      +  + AG V+I
Sbjct:  207 TLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDAFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGATLRCGGKPLDGPGWFYPPTVVTDITKDMALYTEEVFGPVASMYRAADIDEAIEIANATTFGLGSNAWTNDAAEQQRFIDDIEAGQVFI 417          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBP (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD1 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:    5 GLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K  AR     VGDP     + GP    +   +V + +     + A + CGG RL   G+F  PTV +D+  DM +  +E+FGPV S+ +    D+ +  AN T FGL +  +T+        +  + AG V+I
Sbjct:  177 GFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTRDETEQRRFIDDIVAGQVFI 416          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCBO (Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=Mycobacterium bovis GN=gabD1 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 85/245 (34.69%), Postives = 119/245 (48.57%), Query Frame = 2
Query:    5 GLPPG---VLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            G P G    L V SG    A  A+     V   + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R  VH  +YD+FV+K  AR     VGDP     + GP    +   +V + +     + A + CGG RL   G+F  PTV +D+  DM +  +E+FGPV S+ +    D+ +  AN T FGL +  +T+        +  + AG V+I
Sbjct:  177 GFPDGCFQTLLVSSG----AVEAILRDPRVAAATLTGSEPAGQSVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVSTAVTGRVQNNGQSCIAAKRFIVHADIYDDFVDKFVARMAALRVGDPTDPDTDVGPLATEQGRNEVAKQVEDAAAAGAVIRCGGKRLDRPGWFYPPTVITDISKDMALYTEEVFGPVASVFRAANIDEAVEIANATTFGLGSNAWTRDETEQRRFIDDIVAGQVFI 416          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCA1 (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium avium (strain 104) GN=gabD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.965e-33
Identity = 76/212 (35.85%), Postives = 110/212 (51.89%), Query Frame = 2
Query:   95 SFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            + TG    G+ V  +A    +KP  LELGG  PFI+   AD+D+AV+ A  A   N GQ C A  R  VH  +YD FV+K   +     VGDP     + GP       +++ + +   + + ATL CGG  L   G+F  PTV +D+  DM +  +E+FGPV S+ +  + D+ I  AN T FGL +  +T  A      +  + AG V+I
Sbjct:  207 TLTGSEPAGQSVAAIAG-DEIKPTVLELGGSDPFIVMPSADLDEAVKTAVTARVQNNGQSCIAAKRFIVHTDIYDTFVDKFVEQMKALKVGDPTDPATDVGPLATESGRDEIAKQVDDAVAAGATLRCGGKPLDGPGWFYPPTVVTDITKDMALYTEEVFGPVASMYRAADIDEAIEIANATTFGLGSNAWTNDAAEQQRFIDDIEAGQVFI 417          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAAW (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=rocA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 87/232 (37.50%), Postives = 122/232 (52.59%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSAD 682
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+        +G+   +    GP I+ +QF+K+  YI  G E    LE GG    ++GYFV+PT+ S +K    I Q+EIFGPV   +K  + D+ I  AN T +GL   V T + +
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDN-TYMGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNRE 453          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ALDY_BACSU5.865e-3436.82Uncharacterized aldehyde dehydrogenase aldY OS=Bac... [more]
ROCA_STAES3.802e-3337.721-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAEQ3.802e-3337.721-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
GABD1_MYCTU4.965e-3334.69Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCTA4.965e-3334.69Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCPA4.965e-3335.85Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
GABD1_MYCBP4.965e-3334.69Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCBO4.965e-3334.69Succinate-semialdehyde dehydrogenase [NADP+] 1 OS=... [more]
GABD1_MYCA14.965e-3335.85Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
ROCA_STAAW8.469e-3337.501-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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