CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAA3 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=rocA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 87/232 (37.50%), Postives = 122/232 (52.59%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSAD 682
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+        +G+   +    GP I+ +QF+K+  YI  G E    LE GG    ++GYFV+PT+ S +K    I Q+EIFGPV   +K  + D+ I  AN T +GL   V T + +
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDN-TYMGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNRE 453          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAA2 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=rocA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 87/232 (37.50%), Postives = 122/232 (52.59%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSAD 682
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+        +G+   +    GP I+ +QF+K+  YI  G E    LE GG    ++GYFV+PT+ S +K    I Q+EIFGPV   +K  + D+ I  AN T +GL   V T + +
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDN-TYMGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNRE 453          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAA1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rocA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 87/232 (37.50%), Postives = 122/232 (52.59%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSAD 682
            AGLP GV+N V G     G  L  H D   ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH+ VYDE +EK+        +G+   +    GP I+ +QF+K+  YI  G E    LE GG    ++GYFV+PT+ S +K    I Q+EIFGPV   +K  + D+ I  AN T +GL   V T + +
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQNFLKRVIAEMGGKDAIVVDENIDTDMAAEAIVTSAFGFSGQKCSACSRAIVHKDVYDEVLEKSIKLTKELTLGNTVDN-TYMGPVINKKQFDKIKNYIEIGKEEGK-LEQGGGTDDSKGYFVEPTIISGLKSKDRIMQEEIFGPVVGFVKVNDFDEAIEVANDTDYGLTGAVITNNRE 453          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_ANOFW (1-pyrroline-5-carboxylate dehydrogenase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rocA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKS 676
            AGLP GVLN + G G   G  L  H     +SFTG  D G  + E AAK +     LK V  E+GGK   ++  +AD++ A +    + F   GQ C A SR    E VYD+ + +      +  VG+P +     GP ID   + K++ YI  G +    L  GG+   ++G+F+QPTVF+D+     I Q+EIFGPV +  K K+ D  +  AN T +GL   V + +
Sbjct:  224 AGLPAGVLNYIPGSGAEVGDYLVDHPRTRFISFTGSRDVGIRIYERAAKVHPGQIWLKRVIAEMGGKDTIVVDKEADLELAAQSIVASAFGFSGQKCSACSRVVALEDVYDQVLNRVVELTKQLKVGNPEEQSTFMGPVIDQSAYNKIMEYIEIG-KQEGKLMTGGEGDDSKGFFIQPTVFADLDPKARIMQEEIFGPVVAFTKAKDFDHALEIANNTEYGLTGAVISNN 452          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ALDH_PSESP (Probable aldehyde dehydrogenase OS=Pseudomonas sp. GN=terPE PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 88/219 (40.18%), Postives = 122/219 (55.71%), Query Frame = 2
Query:    8 LPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATL-ECGGDRLGNRGYFVQPTVFSDVKDDML-IAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAA 658
            LP GV+NV++G     G  L  H DV K+SFTG   TG+ V   AA ++LK +TLELGG    ++  D+  D  VE   ++ F N GQ C A  R Y+HE +Y+ F +K  A A   ++GD  + GV  GP  + +QF KV+  I +  +    L ECG  R G  GYF+ P  F D+ D+      +E FGP+  +LKF++ D+VI R N  R G  A
Sbjct:  209 LPAGVINVLAG-NDDLGPWLTGHADVAKISFTGSSVTGRHVARSAA-ADLKRLTLELGGNDAAVVMADSLSDAVVERVFWSAFTNAGQICMATKRLYIHESIYEAFRDKLVAYAQNVVIGDGSQPGVTMGPLQNAKQFAKVMSLIDAVRQRGGRLIECGQMR-GGDGYFL-PITFVDLPDESAPEVVEEAFGPLLPLLKFRDVDEVIERVNAARTGWLA 423          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD_DEIRA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Deinococcus radiodurans GN=ssdA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.218e-32
Identity = 78/220 (35.45%), Postives = 109/220 (49.55%), Query Frame = 2
Query:   71 SHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            +H  V  +S TG    G  V ELA + +LK   LELGG  PFI+ D  D+D  V+ A      N GQ C A  R  V + +YDEFV +        + GDP       GP    +    +   ++  I+  AT+  GG R  + G FVQPTV +DV  DM    +E+FGPV  + + ++ D+ +  AN + +GL   VF+   D A  +   L  G VWI
Sbjct:  207 AHPAVQGVSLTGSERAGASVAELAGR-HLKKCVLELGGSDPFIVLDAEDLDTTVKAAATGRLSNTGQACIAAKRLMVVDDLYDEFVSRLGQTFSAFVPGDPADPSTRLGPLSSEQAARDLQAQVQDAIDKGATVVAGGQRPEHPGAFVQPTVLTDVTPDMRAYHEELFGPVAVVYRVRDEDEAVALANASTYGLGGAVFSSDLDRAQRVAERLDTGMVWI 425          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAS1 (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rocA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.490e-32
Identity = 88/248 (35.48%), Postives = 127/248 (51.21%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSN-----LKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLP GV+N V G     G  L   +    ++FTG   TG  + E AAK       LK V  E+GGK   ++  D D D A E    + F   GQ C A SR  VH+ VYDE +EKA A      VG+  ++    GP I+ +QF+K+  YI  G      L+ GG      GYFV+PT+ +++K    I Q+EIFGPV   +K K+ ++++  AN T +GL   V T + +     + +   G +++
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDSVHTHFVTFTGSRATGTRIFERAAKVQDGQQFLKRVIAEMGGKDAIVVDKDIDTDLAAESIVSSAFGFSGQKCSACSRAIVHKDVYDEVLEKAVALTKNLTVGNT-ENNTYMGPVINQKQFDKIKNYIEIG-SKEGKLKQGGGTDDATGYFVEPTIIANLKSSDQIMQEEIFGPVVGFVKGKDFEELLEIANDTDYGLTGAVITNNRENWIEAVESYDVGNLYL 469          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ROCA_STAHJ (1-pyrroline-5-carboxylate dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rocA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 85/248 (34.27%), Postives = 125/248 (50.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAA-----KSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLP GV+N V G     G  L   +    ++FTG   TG  + E +A     ++ LK V  E+GGK   ++ ++ D D A E    + F   GQ C A SR  VH  VYDE +EKA A      VG+   +    GP I+ +QF+K+ +YI  G      +E GG+   + GYF++PT+ S +K    + Q+EIFGPV    KF   ++ I  AN T +GL   V T + +     +     G +++
Sbjct:  224 AGLPKGVVNFVPGDPKEIGDYLVDSVHTHFVTFTGSRATGTRIYERSAVVQEGQTFLKRVIAEMGGKDAIVVDENIDTDLAAESIITSAFGFSGQKCSACSRAIVHSSVYDEVLEKAVALTKELTVGNTVDNTF-MGPVINKKQFDKIKKYIEIG-GKEGKIEIGGEADDSTGYFIKPTIISGLKSSDQVMQEEIFGPVVGFTKFDNFEEAIEIANDTDYGLTGAVITNNRENWIKAVNEFDVGNLYL 469          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD1_MYCLE (Succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium leprae GN=gabD1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.597e-31
Identity = 78/212 (36.79%), Postives = 106/212 (50.00%), Query Frame = 2
Query:   95 SFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            + TG    G+ V  +A  + +KP  LELGG  PFI+   AD+D AV  A      N GQ C A  R   H  +YDEFVEK  AR     VGDP     + GP        +V + + +   + A + CGG R    G+F  PTV +D+  DM +  DE+FGPV S+      DD I  AN T FGL +  +T++       +  + AG V+I
Sbjct:  206 TLTGSEPAGQAVGAIAG-NEIKPTVLELGGSDPFIVMPSADLDAAVATAVTGRVQNNGQSCIAAKRFIAHADIYDEFVEKFVARMETLRVGDPTDPDTDVGPLATESGRAQVEQQVDAAAAAGAVIRCGGKRPDRPGWFYPPTVITDITKDMALYTDEVFGPVASVYCATNIDDAIEIANATPFGLGSNAWTQNESEQRHFIDNIVAGQVFI 416          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: LADH_META3 (Lactaldehyde dehydrogenase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1030 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.070e-31
Identity = 76/241 (31.54%), Postives = 123/241 (51.04%), Query Frame = 2
Query:    8 LPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            +P GV N+++G G   G  +  +  ++KLSFTG  + G   + +  K+  K +TLELGG +P II  DA++++AVE      F N GQ C +  R  + + V DEF+ K   +  +  +G+P          I  +  E+V + I   I     L CGG R       + PT+  ++  D ++A  EIF PV  I++  + ++ + +AN + +GL +GVFT+  + A      L  G V I
Sbjct:  188 IPLGVFNLLTGEGHIVGDEIVKNNKINKLSFTGSVEVG---ESITKKAGFKKITLELGGNNPMIILKDANINKAVESCMSGKFLNSGQVCISVGRVLIEQEVADEFINKIVEKVKKLKIGNPLDEDTNISSLISLDSAERVEKLINKSIGQGGKLICGGKR---ENSIIYPTIL-EITADNILANIEIFAPVLPIIRVNDMNEALNQANNSNYGLHSGVFTQDINKALYFADNLEYGGVLI 421          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ROCA_STAA38.469e-3337.501-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA28.469e-3337.501-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAA18.469e-3337.501-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_ANOFW8.469e-3336.091-pyrroline-5-carboxylate dehydrogenase OS=Anoxyba... [more]
ALDH_PSESP1.445e-3240.18Probable aldehyde dehydrogenase OS=Pseudomonas sp.... [more]
GABD_DEIRA3.218e-3235.45Succinate-semialdehyde dehydrogenase [NADP+] OS=De... [more]
ROCA_STAS15.490e-3235.481-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
ROCA_STAHJ1.597e-3134.271-pyrroline-5-carboxylate dehydrogenase OS=Staphyl... [more]
GABD1_MYCLE1.597e-3136.79Succinate-semialdehyde dehydrogenase [NADP+] OS=My... [more]
LADH_META36.070e-3131.54Lactaldehyde dehydrogenase OS=Methanococcus aeolic... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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