CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: IOLA2_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Oceanobacillus iheyensis GN=iolA2 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.203e-28
Identity = 84/246 (34.15%), Postives = 117/246 (47.56%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGG---DRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLP GV N+V G        L  H  V  +SF G     + V +   + NLK V    G K+  I+  DA+++ A      A F + G+ C A S   V E V DEFV     +A    +G+    GV  GP I  +  E+ L+YI SG E  A L   G   +     GYFV PT+F  V  +M I QDEIF PV SI +    ++ +  AN++RF   A +FT+   +       + AG + +
Sbjct:  197 AGLPNGVFNIVHGAHDVVNGLL-DHKKVAAISFVGSQPVAEYVYKRGTQ-NLKRVQALAGAKNHSIVLSDANLENATTQILNAAFGSAGERCMAASVVAVEEDVADEFVTLLTQKANEIKIGNGLDEGVFLGPVIRDQHKERTLQYIESGEEEGANLVRDGRTDEAAKQEGYFVGPTIFDHVTSEMKIWQDEIFAPVLSIARVNNLEEGVDLANESRFANGACIFTRDGGSVRRFRETIDAGMLGV 440          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: IOLA1_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Geobacillus kaustophilus GN=iolA1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.071e-27
Identity = 88/246 (35.77%), Postives = 120/246 (48.78%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATL-ECGGDRLGNR--GYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG PPGVLNVV G      A L  H D+  +SF G     K V E  A    +   L  G K+  I+  DADV+ AV+    + F + GQ C A S   +     + FV + K +A   I+G+     V   P I     EKVL YI+ GIE  A L   G   + +R  G F+ PT+F  V  DM IA++EIF PV S+L+  + D+ +    K+R+G  A ++TK A           AG + I
Sbjct:  199 AGAPPGVLNVVHGAHEVVNA-LIDHEDIRAISFVGSQPVAKYVYERTAAQGKRVQALS-GAKNHHIVMPDADVETAVQHVISSAFGSAGQRCMACSAVVIVGE-NETFVRRLKQKADELIIGNGMDPEVLLTPVIRQSHREKVLGYIQKGIEEGAVLLRDGRKEMDDRPEGNFLGPTIFDYVTPDMTIAKEEIFAPVLSLLRANDLDEALSYIRKSRYGNGATIYTKDAKAVRKFREEADAGMLGI 441          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: IOLA2_GEOKA (Methylmalonate semialdehyde dehydrogenase [acylating] 2 OS=Geobacillus kaustophilus GN=iolA2 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.387e-27
Identity = 83/246 (33.74%), Postives = 119/246 (48.37%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDR---LGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AGLP GVLN+V G        L  H DV  +SF G    G+ V + AA    K V    G K+  I+  DAD++ AV     A F + G+ C A S       + DE VEK  A A    +G+  +  V  GP I     ++ ++YI  G +  A L   G +   + + GYF+ PT+F  V  DM I +DEIF PV SI++ +  D+ I  ANK+ F   A ++T+           + AG + +
Sbjct:  196 AGLPDGVLNIVHGAHDVVNGLL-EHPDVKAISFVGSQPVGEYVYKTAAAHG-KRVQALTGAKNHSIVMPDADLNVAVREIINAAFGSAGERCMAASVVVAVGEIADELVEKLVAAANELKIGNGLEESVFLGPVIREAHKQRTVKYIELGEKEGAILVRDGRKDAAVQDNGYFIGPTIFDRVTTDMTIWKDEIFAPVLSIVRVETLDEAIEVANKSPFANGACIYTRDGGNVRKFREEIDAGMLGV 439          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: IOLA1_OCEIH (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Oceanobacillus iheyensis GN=iolA1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 79/246 (32.11%), Postives = 120/246 (48.78%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNR---GYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG P GVLN+V G G        +H D++ +SF G     K V +       K V    G K+  ++  D DV++ ++    A F + G+ C A S   V + + DEF+EK      +  VGD        GP I     E+VL YI SG++  A L   G ++      GY+V  T+F  V  DM I QDEIF PV S+++  + ++ IR  N+++F   A ++T S  +A      + AG + +
Sbjct:  197 AGFPKGVLNLVHG-GKEVVNRFLTHPDIEAVSFVGSEPVAKHVYQTGTAHG-KRVQALAGAKNHAVVMPDCDVEKTIQGVLGAAFGSSGERCMACSVVAVVDDIADEFLEKLVKETKKLRVGDGMDDSNFIGPVIRESHKERVLSYIDSGVDEGAHLLVDGRKIKEETPDGYYVGATIFDHVTQDMKIWQDEIFAPVLSVVRVSDLEEGIRVTNQSKFANGAVIYTNSGKSAQQFRNRIDAGMIGV 440          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD_SYNY3 (Probable succinate-semialdehyde dehydrogenase [NADP+] OS=Synechocystis sp. (strain PCC 6803) GN=gabD PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 76/243 (31.28%), Postives = 110/243 (45.27%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG P G    +   G  A   +A    +   + TG    G      AA   +K   LELGG  PFI+ +DAD+DQA+++A  A   N GQ C A  R  V   V +EF ++         VGDP  S  + GP   P+    ++  +   I + A   CGG  L   G +  PT+ +DV  +    + E FGPV         ++ I  AN   FGL A  +T + +    ++R + AG V+I
Sbjct:  173 AGFPEGAFQTLLIGGKVASELMADDR-IQAGTLTGSEPAGASFASAAA-GQIKKTVLELGGSDPFIVLEDADLDQALKVAVPARMQNNGQSCIAAKRFIVQASVAEEFFQRLTKAFQALKVGDPSLSTTDIGPLATPDILADIVAQVEQTIAAGAHCRCGGQALDQPGNYYPPTLLTDVPPNAPTYRQEFFGPVALGFTVDNLEEAIALANDIPFGLGASAWTTNPENQQKLIRGIEAGAVFI 413          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD2_MYCS2 (Putative succinate-semialdehyde dehydrogenase [NADP+] OS=Mycobacterium smegmatis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.317e-27
Identity = 86/244 (35.25%), Postives = 121/244 (49.59%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEK--AKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRG-YFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP  +  VV G G   G A+  + D   L FTG   TG+ + E   +  L   + ELGGK+P I+   A +D A + A  A F N GQ C +  R YV   V DEF  K   + R+MR      F +  + G  I  +Q + V  ++       AT+  GG+   + G  F +PTV + V D+M  A++E FGPV SI   +   + I +AN T +GL A V+  S      +   L+AGTV
Sbjct:  200 AGLPRDLFAVVPGPGSVVGTAIVENCDY--LMFTGSTATGRTLAEQCGR-RLIGFSAELGGKNPMIVTRGAKLDVAAKAATRACFSNAGQLCISIERIYVERAVADEFTAKFGEQVRSMRLAATYDFTA--DMGSLISEDQIKTVSGHVDDAKAKGATVIAGGNIRPDIGPRFYEPTVLTGVTDEMECARNETFGPVVSIYPVESVAEAIEKANDTEYGLNASVWAGSKTEGEAIAAQLQAGTV 438          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTU (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis GN=gabD2 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.185e-26
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRG-YFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K         +G  +   V+ G  I   Q + V  ++       A +  GG    + G  F +PTV ++V  +M  A +E FGPV SI    + D+ + +AN T +GL A V+  S      +   LR+GTV
Sbjct:  200 AGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEMECAANETFGPVVSIYPVADVDEAVEKANDTDYGLNASVWAGSTAEGQRIAARLRSGTV 438          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD2_MYCTA (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.185e-26
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRG-YFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K         +G  +   V+ G  I   Q + V  ++       A +  GG    + G  F +PTV ++V  +M  A +E FGPV SI    + D+ + +AN T +GL A V+  S      +   LR+GTV
Sbjct:  200 AGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEMECAANETFGPVVSIYPVADVDEAVEKANDTDYGLNASVWAGSTAEGQRIAARLRSGTV 438          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBP (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gabD2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.185e-26
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRG-YFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K         +G  +   V+ G  I   Q + V  ++       A +  GG    + G  F +PTV ++V  +M  A +E FGPV SI    + D+ + +AN T +GL A V+  S      +   LR+GTV
Sbjct:  200 AGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEMECAANETFGPVVSIYPVADVDEAVEKANDTDYGLNASVWAGSTAEGQRIAARLRSGTV 438          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: GABD2_MYCBO (Putative succinate-semialdehyde dehydrogenase [NADP+] 2 OS=Mycobacterium bovis GN=gabD2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.185e-26
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRG-YFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP  +  +V G G   G A+  + D   L FTG   TG  + E A +  L   + ELGGK+P I+   A++D+  + A  A F N GQ C +  R YV + + +EF  K         +G  +   V+ G  I   Q + V  ++       A +  GG    + G  F +PTV ++V  +M  A +E FGPV SI    + D+ + +AN T +GL A V+  S      +   LR+GTV
Sbjct:  200 AGLPRALYAIVPGPGSVVGTAITDNCDY--LMFTGSSATGSRLAEHAGR-RLIGFSAELGGKNPMIVARGANLDKVAKAATRACFSNAGQLCISIERIYVEKDIAEEFTRKFGDAVRNMKLGTAYDFSVDMGSLISEAQLKTVSGHVDDATAKGAKVIAGGKARPDIGPLFYEPTVLTNVAPEMECAANETFGPVVSIYPVADVDEAVEKANDTDYGLNASVWAGSTAEGQRIAARLRSGTV 438          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IOLA2_OCEIH8.203e-2834.15Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_GEOKA1.071e-2735.77Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA2_GEOKA2.387e-2733.74Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_OCEIH5.317e-2732.11Methylmalonate semialdehyde dehydrogenase [acylati... [more]
GABD_SYNY35.317e-2731.28Probable succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCS25.317e-2735.25Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCTU1.185e-2632.64Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCTA1.185e-2632.64Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBP1.185e-2632.64Putative succinate-semialdehyde dehydrogenase [NAD... [more]
GABD2_MYCBO1.185e-2632.64Putative succinate-semialdehyde dehydrogenase [NAD... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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