CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_SHEPW (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=astD PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 75/243 (30.86%), Postives = 118/243 (48.56%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVE--QGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GV+N+V G   T G ALASH  +D L FTG   TG I+ +  A    K + LE+GG +P II    D   AV     + + + GQ C    R YV +    + + +  A A+  I    + +  +   G  I     + ++   R+ +   AT       L      V P +  DV D + +  +E FGP+  ++++ + D+ I+ AN TR+GL+AG+   S +  +  +  +RAG V
Sbjct:  187 AGLPAGVINLVQGEVET-GKALASHPQIDGLFFTGSSRTGHILHQQYAGDPGKILALEMGGNNPLIIKGVEDTKAAVHDIIQSAYISSGQRCTCARRLYVEKGAAGDALLEQLAVAVNNIQVGAWNAQPQPFMGSMISETAAKGMVEAQRNLVNLGATPMVELTHLEAGTGLVSPGLI-DVTDVIELPDEEYFGPLLQVVRYSDFDEAIKLANATRYGLSAGILADSREDYDYFLARIRAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_BURXL (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=astD PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 80/252 (31.75%), Postives = 120/252 (47.62%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV-HERVYDEFVEKAKARAMRRIVGD------PFKSGVEQGPQIDPEQFEKVL----RYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GVLN+V G   T G ALA+H  +D L FTG  DTG ++ +         + LE+GG +P +I   ADVD AV     + F + GQ C    R +V ++   D F+E+      R  VG+      PF   V     I      +++    R +  G ++   +E    +LG    FV P +  DV +      +E FGP+  I+++   ++ + +AN T FGL+AG+            R +RAG V
Sbjct:  188 AGLPAGVLNLVQGEKDT-GIALANHRQIDGLFFTGSSDTGTLLHKQFGGRPEIVLALEMGGNNPLVIGPVADVDAAVHHTIQSAFLSAGQRCTCARRIFVPNDAAGDRFLERFTEVTSRITVGEYNADPQPFMGAV-----ISVRAASRLVAAQERLLADGAKALLKMEQRDPKLG----FVTPAIL-DVTNVANRPDEEHFGPLAQIIRYGSFNEALEQANDTEFGLSAGLLADDEALWAHFQRTIRAGIV 428          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: MMSA_DROME (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Drosophila melanogaster GN=CG17896 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 79/247 (31.98%), Postives = 109/247 (44.13%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG PPGV+NV+ G        +    ++  +SF G    GK + E A K N K V   +G K+  II  DA+ +  +     A F   GQ C A S T V       ++     RA +  V      G + GP I     +++   I SG++  A L   G ++       GYFV PT+ SDV   M    +EIFGPV  ILK    DD I   N   +G    VFT +   A   +  + AG V +
Sbjct:  214 AGCPPGVVNVIHGQHDAVNF-ICDAPEIKAVSFVGSDQAGKYIYERAGK-NGKRVQSNMGAKNHGIILGDANKENTLNQLAGAAFGAAGQRCMALS-TAVFVGDAQAWIPDLVERAQKLKVNAGHVPGTDVGPVISAASRQRINDLIESGVKEGAKLILDGRKITVPGYEDGYFVGPTILSDVTPSMKCYTEEIFGPVLVILKADTLDDAIGIVNANPYGNGTAVFTTNGAAARKFVNEIDAGQVGV 457          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECOL6 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O6 GN=astD PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 78/250 (31.20%), Postives = 121/250 (48.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++      D F+ +  A + R   G       PF  G+  EQ  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRATGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFLKSGTQGDAFLARMVAVSQRLTPGTWDDEPQPFIGGLISEQAAQQVVTAWQELEAMGGRTLLAPRLLQAGTSLL--TPGIIEMTGVTGVPD------EEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLGARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD2_PSEHT (N-succinylglutamate 5-semialdehyde dehydrogenase 2 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=astD2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 77/243 (31.69%), Postives = 115/243 (47.33%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVGDPFKSGVE-QGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GV+N+V G   T G ALA+H D+D L FTG  +TG ++ +  A    K + LE+GG +P II D  DV  AV     + F   GQ C    R ++      D  + K  +     +V D F +     G  I  +    ++      +   A +     +L     FV P +  DV +   +  +E FGP+  I ++ + D  I  AN T FGL+AG+   S +  N  ++ +RAG V
Sbjct:  188 AGLPAGVINLVQGEIET-GKALAAHQDIDGLFFTGSSNTGHLLHKQFAGHPGKILALEMGGNNPLIIKDVNDVSAAVHDIIQSGFITSGQRCTCARRVFIENSSNGDAILAKLISATKNIVVDDSFATEQPFMGAMISEKAALGMVAAQNELVAKGAEVLVELKQLKPGTGFVSPGII-DVTNVNDMPDEEHFGPLIKIYRYSDFDSAINEANNTSFGLSAGLLADSENDYNHFLKRIRAGIV 428          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: MMSA_RAT (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Rattus norvegicus GN=Aldh6a1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 73/250 (29.20%), Postives = 119/250 (47.60%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV---HERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            +G P G LN++ G        +  H D+  +SF G    G+ + E  ++ N K V   +G K+  ++  DA+ +  +     A F   GQ C A S   +    ++   E VE+AK   +R   GD  + G + GP I P+  E+V   I SG +  A++   G ++  +GY    FV PT+ S+VK  M   ++EIFGPV  +L+ +  D+ I+  N   +G    +FT +   A      +  G V +
Sbjct:  228 SGAPDGTLNIIHGQHEAVNF-ICDHPDIKAISFVGSNQAGEYIFERGSR-NGKRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVERAKN--LRVNAGD--QPGADLGPLITPQAKERVCNLIDSGAKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPSMTCYKEEIFGPVLVVLETETLDEAIKIVNDNPYGNGTAIFTTNGAIARKYAHMVDVGQVGV 471          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: MMSA_HUMAN (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 73/250 (29.20%), Postives = 119/250 (47.60%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV---HERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            +G P G LN++ G        +  H D+  +SF G    G+ + E  ++   K V   +G K+  ++  DA+ +  +     A F   GQ C A S   +    ++   E VE AK   +R   GD  + G + GP I P+  E+V   I SG +  A++   G ++  +GY    FV PT+ S+VK +M   ++EIFGPV  +L+ +  D+ I+  N   +G    +FT +  TA      +  G V +
Sbjct:  228 SGAPDGTLNIIHGQHEAVNF-ICDHPDIKAISFVGSNKAGEYIFERGSRHG-KRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEHAKN--LRVNAGD--QPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRKIKVKGYENGNFVGPTIISNVKPNMTCYKEEIFGPVLVVLETETLDEAIQIVNNNPYGNGTAIFTTNGATARKYAHLVDVGQVGV 471          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: MMSA_DROPS (Probable methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA14712 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 78/247 (31.58%), Postives = 108/247 (43.72%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLG----NRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            AG PPGV+NV+ G        +     +  +SF G    GK + E A K N K V   +G K+  +I  DA+ +  +     A F   GQ C A S T V       ++     RA +  V      G + GP I     +++   I SG++  A L   G ++       GYFV PT+ SDV   M    +EIFGPV  ILK    DD I   N   +G    VFT +   A   +  + AG V +
Sbjct:  214 AGCPPGVVNVIHGQHDAVNF-ICDAPAIKAVSFVGSDQAGKYIYERAGK-NGKRVQSNMGAKNHGVILSDANKENTLNQLAGAAFGAAGQRCMALS-TAVFVGDAQGWIPDLVERAQKLKVNAGHVPGTDVGPVISAASRQRINDLIESGVKEGAKLILDGRKISVPGFEDGYFVGPTILSDVTPSMKCYTEEIFGPVLVILKADNLDDAIDIVNANPYGNGTAVFTTNGAAARKFVNEIDAGQVGV 457          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: MMSA_BOVIN (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Bos taurus GN=ALDH6A1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 73/250 (29.20%), Postives = 118/250 (47.20%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYV---HERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGY----FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWI 730
            +G P G LN++ G        +  H D+  +SF G    G+ + E  ++   K V   +G K+  ++  DA+ +  +     A F   GQ C A S   +    ++   E VE+AK   +R   GD  + G + GP I P+  E+V   I SG +  A++   G  +  +GY    FV PT+ S+VK +M   ++EIFGPV  +L+    D+ I+  N   +G    +FT +  TA      +  G V +
Sbjct:  230 SGAPDGTLNIIHGQHEAVNF-ICDHPDIKAISFVGSNQAGEYIFERGSRHG-KRVQANMGAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAILVGEAKKWLPELVERAKK--LRVNAGD--QPGADLGPLITPQAKERVCNLIDSGTKEGASILLDGRSIKVKGYENGNFVGPTIISNVKPNMTCYKEEIFGPVLVVLETDTLDEAIKIVNDNPYGNGTAIFTTNGATARKYSHLVDVGQVGV 473          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_PHOPR (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Photobacterium profundum GN=astD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 77/248 (31.05%), Postives = 121/248 (48.79%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDD-ADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRI-VGDPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATL-ECGGDRL----GNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GVLN+V G  PT G ALA    +D L FTG  +TG I+    A    K + LE+GG +P +I     ++D  V     + F + GQ C    R Y+ + +  + +      A  +I +G PF    E  P + P+  E+    I   I + A L   GG+ L      +G  V P +  +V +   +  +E FGP+  ++++++  D +  AN TR+GL+AG+ +         +  +RAG V
Sbjct:  187 AGLPKGVLNMVQGARPT-GEALAGSKGIDGLLFTGSANTGHILHRQYAGQPGKMLALEMGGNNPMVISKSYGELDATVYTIIQSAFISAGQRCTCARRLYLPQGIEGDAILNRLVEATAKIRIGGPF---AEPQPFMGPQISERAADGI---IAAQANLVSLGGEVLLEAIRGQGAIVSPAII-EVSNVAELPDEEYFGPLLQVVRYQDLPDAVELANDTRYGLSAGLVSTDDSEWQYFIDNIRAGIV 426          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_SHEPW1.498e-2130.86N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_BURXL1.498e-2131.75N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
MMSA_DROME2.556e-2131.98Probable methylmalonate-semialdehyde dehydrogenase... [more]
ASTD_ECOL63.338e-2131.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD2_PSEHT3.338e-2131.69N-succinylglutamate 5-semialdehyde dehydrogenase 2... [more]
MMSA_RAT4.360e-2129.20Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
MMSA_HUMAN4.360e-2129.20Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
MMSA_DROPS4.360e-2131.58Probable methylmalonate-semialdehyde dehydrogenase... [more]
MMSA_BOVIN4.360e-2129.20Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
ASTD_PHOPR4.360e-2131.05N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
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