CX295024

Overview
NameCX295024
Unique NameCX295024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECO81 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=astD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 75/248 (30.24%), Postives = 119/248 (47.98%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++      D F+ +  A + R   G       PF  G+     I  +  ++V+   +  +E+         RL   G  +      ++     +  +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHHQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFLKSGTQGDAFLARLVAVSQRLTPGTWDDEPQPFIGGL-----ISEQAAQQVVTAWQE-LEAMGGRTLLAPRLLQAGTSLLTPGIIEMTGVTGLPDEEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECO7I (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 78/250 (31.20%), Postives = 120/250 (48.00%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G       PF  G+  EQ  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGRWDDEPQPFIGGLISEQAAQQVVTAWQQLETMGGRTLLAPRLLQAGTSLL--TPGIIEMTGVTGVPD------EEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECO45 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 75/248 (30.24%), Postives = 119/248 (47.98%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGVEQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R ++      D F+ +  A + R   G       PF  G+     I  +  ++V+   +  +E+         RL   G  +      ++     +  +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLFLKSGTQGDAFLARLVAVSQRLTPGTWDDEPQPFIGGL-----ISEQAAQQVVTAWQE-LEAMGGRTLLAPRLLQAGTSLLTPGIIEMTGVTGLPDEEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLI (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12) GN=astD PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 78/250 (31.20%), Postives = 121/250 (48.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVGD------PFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G+      PF  G+  EQ  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLL--TPGIIEMTGVAGVPD------EEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECODH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=astD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 78/250 (31.20%), Postives = 121/250 (48.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVGD------PFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G+      PF  G+  EQ  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLL--TPGIIEMTGVAGVPD------EEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECOBW (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=astD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 78/250 (31.20%), Postives = 121/250 (48.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVGD------PFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G+      PF  G+  EQ  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAWQQLEAMGGRPLLAPRLLQAGTSLL--TPGIIEMTGVAGVPD------EEVFGPLLRVWRYDTFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_AERHH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=astD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.657e-20
Identity = 79/249 (31.73%), Postives = 118/249 (47.39%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDEFVEKAKARAMRRIVGDPFKSGVEQGPQIDPEQFEKVLRYIRSG-IESNATLE-CGGDRLGNRGY------FVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GVLN+V G   T G ALA + D+D L FTG   TG  + +  A    K + LE+GG +P I+ D +D+D AV     + F   GQ C    R +V   V  +    A  + +  +VG   K G+    +  P     +      G +E+ A L+  GG+ L    +      FV P +  DV     +  +E FGP+  ++++ + D  I + N T FGL+AG+   S        + +RAG V
Sbjct:  190 AGLPKGVLNLVQGEVDT-GKALAGNPDIDGLFFTGSSRTGHFLHQQFAGQPGKILALEMGGNNPLIVKDVSDIDGAVHAIVQSAFITSGQRCTCSRRLFVERSVQGD----ALVKRLVEVVGQ-IKVGLYDAAE-QPFMGAMISEKAALGMVEAQANLQRLGGESLLTLTHLEAGTGFVSPGII-DVTAVSALPDEEYFGPLLQLIRYDDFDAAIDQGNATSFGLSAGLLGDSEADWQHFFKRIRAGIV 430          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_HAHCH (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) GN=astD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 84/257 (32.68%), Postives = 120/257 (46.69%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVYDE-FVEKAKARAMRRIVG------DPFKSGVEQGPQIDP---------EQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLP GVLN+V G   T G ALA++  +D L FTG   TG  +         K + LE+GG +P II    D+  AV    F+ F + GQ C    R  V +    + F+++  A A    VG       PF  GV      D           +  ++L  +RS +E NA+L             + P V  DV D   +  +E FGP+  +L++++ D  +  ANKT FGLAAG+ + S D  +     +RAG V
Sbjct:  191 AGLPDGVLNLVQGARET-GVALAANDGIDGLLFTGSSPTGHSLHRQFGGRPEKILALEMGGNNPLIIAPPYDLKGAVHHTLFSAFVSAGQRCTCARRLLVPDTAEGQAFLDELIAAAANLQVGRYDADPQPFMGGVISLRARDQMLAAQNKLAAEGGRILLEMRS-LEENASL-------------LSPGVI-DVTDVQELPDEEHFGPMLQVLRYRDFDHALELANKTGFGLAAGLISDSRDLYDRFWLEVRAGIV 431          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECOSM (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=astD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 78/250 (31.20%), Postives = 119/250 (47.60%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G       PF  G+  EQ  Q     + ++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ +   +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEAADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGTWDDEPQPFIGGLISEQAAQQVVTAWHELEAMGGRTLLAPRLLQAGTSLL--TPGIIEMTGVTGVPD------EEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIV 427          
BLAST of CX295024 vs. ExPASy Swiss-Prot
Match: ASTD_ECOLU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=astD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 77/250 (30.80%), Postives = 121/250 (48.40%), Query Frame = 2
Query:    2 AGLPPGVLNVVSGYGPTAGAALASHMDVDKLSFTGHCDTGKIVQELAAKSNLKPVTLELGGKSPFIIFDDADVDQAVELAHFALFYNQGQCCCAGSRTYVHERVY-DEFVEKAKARAMRRIVG------DPFKSGV--EQGPQIDPEQFEKVLRYIRSGIESNATLECGGDRLGNRGYFVQPTVFSDVKDDMLIAQDEIFGPVQSILKFKETDDVIRRANKTRFGLAAGVFTKSADTANTMMRALRAGTV 724
            AGLPPGVLN+V G G   G AL++  D+D L FTG  +TG  +    +    K + LE+GG +P II + AD+D AV L   + F   GQ C    R  +      D F+ +  A + R   G       PF  G+  +Q  Q     ++++       + +   L+ G   L      ++ T  + V D      +E+FGP+  + ++   D+ IR AN TRFGL+ G+ + + +  + ++   RAG V
Sbjct:  187 AGLPPGVLNLVQG-GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLARLVAVSQRLTPGKWDDEPQPFIGGLISDQAAQQVVTAWQQLEAMGGRPLLAPCLLQAGTSLL--TPGIIEMTGVAGVPD------EEVFGPLLRVWRYDNFDEAIRMANNTRFGLSCGLVSPAREKFDQLLLEARAGIV 427          
The following BLAST results are available for this feature:
BLAST of CX295024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASTD_ECO811.269e-2030.24N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO7I1.269e-2031.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECO451.269e-2030.24N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOLI1.657e-2031.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECODH1.657e-2031.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOBW1.657e-2031.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_AERHH1.657e-2031.73N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_HAHCH2.164e-2032.68N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOSM2.164e-2031.20N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_ECOLU2.164e-2030.80N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065G06SK DroRLeaf1 Citrus clementina cDNA clone C05065G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295024 ID=CX295024; Name=CX295024; organism=Citrus clementina; type=EST; length=735bp
GGCTGGTCTTCCCCCCGGTGTTTTGAATGTAGTCTCTGGTTATGGTCCAA
CAGCTGGTGCAGCTCTTGCCAGCCATATGGATGTGGACAAGCTGTCTTTT
ACAGGACACTGTGATACTGGTAAGATTGTTCAGGAACTGGCTGCAAAAAG
CAACCTTAAGCCAGTAACCTTAGAACTTGGAGGGAAATCACCATTTATAA
TATTCGATGATGCTGATGTTGACCAGGCTGTGGAACTTGCACACTTTGCT
TTGTTCTATAATCAGGGACAATGTTGCTGTGCTGGATCTCGTACTTATGT
ACATGAGCGTGTATATGACGAGTTTGTAGAAAAAGCAAAGGCACGTGCAA
TGAGGCGTATTGTTGGCGATCCCTTCAAGAGTGGTGTTGAACAAGGTCCT
CAGATTGATCCAGAGCAATTTGAGAAGGTCCTTAGGTACATAAGGTCTGG
AATTGAAAGCAATGCAACCCTTGAGTGTGGAGGTGATAGATTGGGCAACA
GAGGCTACTTTGTTCAGCCAACTGTCTTCTCAGATGTTAAGGATGACATG
TTGATAGCACAGGATGAAATCTTTGGCCCGGTGCAATCCATCTTGAAGTT
CAAGGAAACTGATGACGTTATAAGAAGAGCAAATAAAACACGCTTTGGTC
TAGCTGCTGGGGTTTTCACCAAGAGTGCAGACACTGCTAACACCATGATG
CGTGCACTGAGAGCTGGGACTGTATGGATTACTGC
back to top