CX295030

Overview
NameCX295030
Unique NameCX295030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.959e-48
Identity = 103/235 (43.83%), Postives = 148/235 (62.98%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDL-GFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK    ARPVLGG+Q PYPRR RTGRP   TD  +E R       YV RDE F E K    S   + ++LH  +P L ++ V PD+  F  F  +D LF EG+ L     +  +  +    V+ I++  + +L ++TP+ + +DKF W RD+EF+RQ LAG+NP +I  +  +P  S LDP +YGPPESAIT E I   + GM SV+EA++  +L++LDYHD+FLP+++++
Sbjct:  251 LGNPDKGVASARPVLGGEQMPYPRRMRTGRPSTATDASAESRVEYPEPIYVSRDEEFEEGKNEMLSEGAIKALLHNFMPLLVSS-VSPDIRDFAGFHDVDNLFKEGLRLKQALHDQLFQKI--PFVRKIQENSEGLLRYDTPDIIKKDKFAWLRDDEFARQALAGINPVNIERLQAFPPVSKLDPAVYGPPESAITEEHIIGHLDGM-SVQEAVEGSRLYMLDYHDIFLPFLDRI 481          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.485e-42
Identity = 102/235 (43.40%), Postives = 137/235 (58.30%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PD   + ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      F + + P  ++K I  T G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG     I  E +E  +GG ++VE+AI+ KKLFILD+HD  +PY+ K+
Sbjct:  206 LGNPDSGDKYARPVLGGSALPYPRRERTGRGKTRKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGIKSVSQDVLPVLTDAFDGNILSLEFDNFAEVHKLYEGGVTLP----TNFLSKIAPIPVIKEIFRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKI 435          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 97/233 (41.63%), Postives = 136/233 (58.37%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK   LARPVLGG   PYPRR RTGRP+   D  SEK     Y+PRDEAF  +K   F A  + SV   ++P L  AF      L F  F+ +  L+  GV LP      +    +P + +     G+  L +  P+ M  +K  W  DEEF+R+T+AG+NP  I+ + E+P +S LD + +G   S IT E +E  +GG ++VE+AI+ KKLFILD+HD  +PY+ ++
Sbjct:  100 LGNPDKGAALARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYGLKSVSQDVLPVLTDAFDGNLLSLEFDNFAEVHKLYEGGVTLPTNFLSKY--APIPIVKEIFRSDGEQFLKYPPPKVMQVNKSAWMTDEEFARETIAGVNPNVIKSLEEFPPRSKLDTQSFGDHTSIITKEHLEINLGG-LTVEQAIQSKKLFILDHHDYLIPYLRRI 329          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 98/237 (41.35%), Postives = 133/237 (56.12%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVD---PDLGFPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PD      RP+LGG    PYPRR RTGR R  TD  SEK  G  YVPRDE F  +K   F    + S+ H ++P  ++A          F  F  + +L+  G+ LP   L Q     + LP L +     G+N+L F  P      K  W  DEEF+R+ +AG+NP  IR + E+P KSTLDP +YG   S IT E +E  +GG ++VEEA+  ++LFILDY D F+PY+ ++
Sbjct:  218 LGNPDGGDP--RPILGGSSIYPYPRRVRTGRERTRTDPNSEK-PGEVYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPTDILSQI----SPLPALKEIFRTDGENVLQFPPPHVAKVSKSGWMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRI 446          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 97/243 (39.92%), Postives = 135/243 (55.56%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG-----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFW-----NTLLPRLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK  E ARP+LGG    PYPRR RTGR     D   E R       + YVPRDE F  VK+  F   ++ S L  L+P+ +    +    F  F+ +  L+  G+ LP    EG W     + +   ++K I  T G  +L + TP+ +  DK  W  DEEF R+ LAG NP  I  + E+P KS LDP IYG   S ITTE ++ ++ G ++V EAIK  +LFIL++HD+ +P + K+
Sbjct:  205 LGEPDKGEEYARPILGGSSEYPYPRRGRTGREPTKADPNCESRNPLPMSLDIYVPRDERFGHVKKSDFLTSSLKSSLQTLLPAFKALCDNTPNEFNSFADVLNLYEGGIKLP----EGPWLKAITDNISSEILKDILQTDGQGLLKYPTPQVIQGDKTAWRTDEEFGREMLAGSNPVLISRLQEFPPKSKLDPTIYGNQNSTITTEHVQDKLNG-LTVNEAIKSNRLFILNHHDIVMPLLRKI 442          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 93/240 (38.75%), Postives = 135/240 (56.25%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LG PDK  +L RPVLGG Q  PYPRR RTGR    TD  +E R    + N YVPRDE F  +K   F   ++ +++  ++P + T        F  F  I  L+  G+ +            +P  L+K++    GD +L    P  +  DKF W  DEEF+R+ LAG+NP  I+ +T +P KSTLDP +YG   S IT   I+  + G ++V+ A+K  +LFILD+HD F+P+++K+ +
Sbjct:  213 LGQPDKGSKLVRPVLGGSQELPYPRRGRTGRAPTKTDPNTESRLPLLDLNIYVPRDERFGHLKMSDFLGYSLKAIVEGVLPIIRTYVDTTPKEFDSFQDIMELYEGGLKVANASALAEIKKRVPFELIKSLLPVAGDQVLKLPLPHVIKEDKFAWRTDEEFAREMLAGVNPVMIKRLTNFPAKSTLDPNVYGDHTSKITEAHIKHNMEG-LTVQNALKGNRLFILDHHDHFMPFLDKINK 451          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 98/239 (41.00%), Postives = 131/239 (54.81%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG P K P   RPVLGG Q  PYPRR RTGR     D  +E R       + YVPRDE F  +K   F A  + ++   + P+LE  F D    F  F  +  ++ EG++LP   L      N  L  L +     G   L F  P+ +  DK  W  DEEF+R+ LAGLNP  I+L+ E+P KS LD E YG   S IT   IE  + G ++VEEA+++++LFILD+HD  +PY+ +V
Sbjct:  208 LGVPPKNP---RPVLGGTQEYPYPRRGRTGRKPTKEDPQTESRLPITSSLDIYVPRDERFGHLKMSDFLAYALKAIAQFIQPALEAVFDDTPKEFDSFEDVLKIYEEGIDLPNQALIDSIVKNIPLEMLKEIFRTDGQKFLKFPVPQVIKEDKTAWRTDEEFAREMLAGLNPVVIQLLKEFPPKSKLDSESYGNQNSTITKSHIEHNLDG-LTVEEALEKERLFILDHHDTLMPYLGRV 442          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 95/237 (40.08%), Postives = 134/237 (56.54%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG---FPYFSAIDALFNEGVNLPP--LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PD     ARPVLGG +  PYPRR RTGR     D  SE R    Y+PRDEAF  +K   F    + +V   +VP+LE+ F D +     F  F  +  L+  G+ LP   L Q     + LP L +     G+N L +  P+ +   +  W  DEEF+R+ LAG+NP  I  + E+P +S LD +IYG   S I+ E +E  + G ++VEEAI+ KKLF+LD+HD  +PY+ ++
Sbjct:  213 LGNPDSGENHARPVLGGSETYPYPRRGRTGRKPTRKDPNSESRSDYVYLPRDEAFGHLKSSDFLTYGLKAVSQNVVPALESVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQI----SPLPVLKEIFRTDGENTLKYPPPKVIQVSRSGWMTDEEFAREMLAGVNPNVICCLQEFPPRSKLDSQIYGDHTSKISKEHLEPNLEG-LTVEEAIQNKKLFLLDHHDSIMPYLRRI 444          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 95/237 (40.08%), Postives = 133/237 (56.12%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFP-----YFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LGDPDK    ARPVLGG    PYPRR RTGR     D  SE R  + Y+PRDEAF  +K   F    + SV   ++P L++AF   DL F       F  +  L++ G+ LP         + LP L +     G+  L F  P+ +   K  W  DEEF+R+ LAG+NP  IR + E+P +S LD ++YG   S IT E +E  + G ++V+EAI+ K+LF+L +HD  +PY+ ++
Sbjct:  210 LGDPDKGENHARPVLGGNDTFPYPRRGRTGRKPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSVSQNVLPLLQSAF---DLNFTPREFDSFDEVHGLYSGGIKLPTDIISKI--SPLPVLKEIFRTDGEQALKFPPPKVIQVSKSAWMTDEEFAREMLAGVNPNLIRCLKEFPPRSKLDSQVYGDHTSQITKEHLEPNLEG-LTVDEAIQNKRLFLLGHHDPIMPYLRRI 440          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 94/239 (39.33%), Postives = 132/239 (55.23%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDPE+YG   S IT E IE ++ G ++++EAI   KLFIL++HD+ +PY+ ++
Sbjct:  206 LGNPDQGKENVRTTLGGSADYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTDAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLEEFPPKSKLDPELYGNQNSTITAEHIEGKLDG-LTIDEAINSNKLFILNHHDVLIPYLRRI 443          
The following BLAST results are available for this feature:
BLAST of CX295030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX5_ORYSJ3.959e-4843.83Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX4_SOYBN2.485e-4243.40Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXB_PHAVU7.231e-4241.63Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXX_SOYBN3.359e-3941.35Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXB_SOLLC5.729e-3939.92Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX4_ORYSJ7.483e-3938.75Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_ARATH1.667e-3841.00Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_PEA2.177e-3840.08Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX3_SOYBN2.844e-3840.08Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOXA_SOLLC8.273e-3839.33Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]

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Properties
Property NameValue
Genbank descriptionC05065G12SK DroRLeaf1 Citrus clementina cDNA clone C05065G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295030 ID=CX295030; Name=CX295030; organism=Citrus clementina; type=EST; length=713bp
GATTCGGCCGAGGTCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGG
CCTGTGCTTGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGG
ACGCCCACGGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACT
TTTATGTTCCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTT
TCAGCAAAGACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGA
AACCGCCTTTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTG
ACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGT
TTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGG
AGATAATATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAAT
TCTTTTGGTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTC
AACCCGTATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACT
CGATCCTGAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGA
TTGAAAAAGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAA
AAGAAGTTGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGA
AAAAGTGAGACAA
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