CX295030

Overview
NameCX295030
Unique NameCX295030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.843e-37
Identity = 94/239 (39.33%), Postives = 131/239 (54.81%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGK-QNPYPRRCRTGRPRCDTDQFSEKR-----EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLP--PLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PD+  E  R  LGG  + PYPRR RTGRP   TD  SE R       + YVPRDE F  +K   F    + S++  ++P L   F      F  F  +  L+  G+ LP  PL +       L  + + +   G+ IL F TP  +   K  W  DEEF+R+ LAG+NP  I  + E+P KS LDPE YG   S IT E IE ++ G ++V+EA+   KLFIL++HD+ +PY+ ++
Sbjct:  207 LGNPDQGKENVRTTLGGSAEYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTPLVIKDSKTAWRTDEEFAREMLAGVNPVIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDG-LTVDEAMNNNKLFILNHHDVIIPYLRRI 444          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.106e-37
Identity = 96/241 (39.83%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFP-----YFSAIDALFNEGVNLPPLKQEGFWNTLLPR-LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LG+PD     ARP+LGG   +PYPRR RTGR     DQ SEK  G  YVPRDE F  +K   F A  + S+   ++P+ E+ F   DL F       F  +  L   G+ LP        +T++P  +VK +  T G+ +L F  P  +   K  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +V+EA+  ++LF+LDYHD+F+PY+ ++ Q
Sbjct:  222 LGNPDHGENFARPILGGSSTHPYPRRGRTGRYPTRKDQNSEK-PGEVYVPRDENFGHLKSSDFLAYGIKSLSQYVLPAFESVF---DLNFTPNEFDSFQDVRDLHEGGIKLPT----EVISTIMPLPVVKELFRTDGEQVLKFPPPHVIQVSKSAWMTDEEFAREMVAGVNPCVIRGLQEFPPKSNLDPTIYGEQTSKITADALDLD---GYTVDEALASRRLFMLDYHDVFMPYIRRINQ 451          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 4.106e-37
Identity = 93/238 (39.08%), Postives = 136/238 (57.14%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAF--VDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPR-LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP        +T++P  ++K +  T G +IL F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT + ++ +     +++EA+  ++LF+LDYHD+F+PYV ++ Q
Sbjct:  192 LGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP----RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQ 422          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 98/241 (40.66%), Postives = 134/241 (55.60%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFP-----YFSAIDALFNEGVNLPPLKQEGFWNTLLPR-LVKAIEDT-GDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQ 713
            LG+PD    LARP+LGG   +PYPRR RTGR     D  SEK     YVPRDE F  +K   F A  + SV   +VP+ E+AF   DL F       F  +  LF  G+ LP        +TL P  +VK I  T G+ +L F  P  +   K  W  DEEF+R+ LAG+NP  IR + E+P KS LDP  YG   S I+ +++  +     +++EA+   +LFILDYHD F+P++ ++ +
Sbjct:  218 LGNPDHGEHLARPILGGSSTHPYPRRGRTGRYPTRKDPNSEKPATETYVPRDENFGHLKSSDFLAYGIKSVSQCVVPAFESAF---DLNFTPNEFDSFQDVRNLFEGGIKLPL----DVISTLSPLPVVKEIFRTDGEQVLKFTPPHVIRVSKSAWMTDEEFAREMLAGVNPCMIRGLQEFPPKSNLDPAEYGDHTSKISVDVLNLD---GCTIDEALASGRLFILDYHDTFIPFLRRINE 448          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 89/235 (37.87%), Postives = 128/235 (54.47%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAID---ALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG PD+K  L RPVLGG    PYPRR RTGR +   +  SE R    Y+PRDEAF  VK   F    + S    +VP L +  V   L  P F+  +   +L++ G+ LP         + +P   +     G+  L F  P+ +  D   W  DEEF+R+ +AG+NP+ I+ +  +P+KS LD ++YG   S IT E +E  +GG ++VE AI+  +LF  D+HD   PY+ K+
Sbjct:  218 LGAPDQKATLGRPVLGGSSTLPYPRRGRTGRKKTVKEPQSESRSDTVYLPRDEAFGHVKSSDFLVYILKSASQNIVPQLRSV-VTLQLNNPEFNTFEDVRSLYDGGIKLPTDVLSKI--SPIPLFSELFRSDGEAALKFPPPKVIQVDHSAWMTDEEFAREMIAGVNPHIIKEVLSFPIKSKLDSQLYGDNTSKITKEHLEPNLGG-VTVEGAIQTNRLFTPDHHDALFPYLRKI 448          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 95/235 (40.43%), Postives = 139/235 (59.15%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQ-NPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQ-EGFWNTLLPRLVKAIEDTGDNILL-FETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYV 698
            LG+PD+  +  RPVLGG Q +PYPRR RTGR     D  SE R       YVP DE F+ +K   F+  ++ +++  ++P++ T +VD   G F  F  I  L+  G+ LP +   E    +   +L+K +   G + LL F  P+ +  ++  W  DEEF+R+ LAGLNP  IR +TE+P KSTLDP  YG   S IT   IEK + G +SV++A+   +L+ILD+HD F+P++
Sbjct:  206 LGEPDR--DNPRPVLGGSQKHPYPRRGRTGRIPTKKDPNSESRLSLLEQIYVPSDERFAHLKMSDFAGYSIKAIVQGILPAIRT-YVDLTPGEFDSFEDILKLYRGGLKLPSIPALEELRKSFPVQLIKDLLPVGGSYLLKFPKPDIIKENEVAWRTDEEFAREILAGLNPMVIRRLTEFPPKSTLDPSKYGDQTSTITPAHIEKNLEG-LSVQQALDSNRLYILDHHDHFMPFL 436          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.011e-35
Identity = 89/232 (38.36%), Postives = 128/232 (55.17%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG+PDK   LAR  LGG  + PYPRR RTGR     D   E    + Y+PRDE F  +K   F    + S+   ++P+ + AF   +  F  F  +  LF  G+ LP         + +P L + +   G+ +L F  P  +   K  W  DEEF R+ LAG+NP  I+ + E+P KS LD  +YG   S +T E +E  +GG ++VEEA+   +LFILD+HD F+PY+E++
Sbjct:  218 LGNPDKNKNLARTTLGGSSDFPYPRRGRTGRKSTRKDPKCEIPTSDTYIPRDENFGHLKSGDFLTYAIKSLTQNVLPTFQKAFGFNN-EFDTFEDVRGLFEGGLYLPTDVISKI--SPIPVLKEILRTDGEQVLKFPPPHVIRVTKSAWMTDEEFGREMLAGVNPCLIQRLQEFPPKSKLDVTVYGDQTSTMTKEHLEINLGG-LTVEEALHGNRLFILDHHDAFIPYLERI 445          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.321e-35
Identity = 91/238 (38.24%), Postives = 128/238 (53.78%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLP--RLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKV 707
            LG PDK P+  RPVLGG    PYPRR +TGR    +D  SE R      N YVPRDE FS VK   F A  + SV   LVP + +        F  F  +  L++  + L           ++P     + + + G+  L +  P+ +   +  W  DEEF+R+ LAGLNP  I  + E+P KS LD   YG   S+I TE IE  + G ++V+EA++Q KL+ILD+HD  +PY+ ++
Sbjct:  228 LGAPDKGPDSVRPVLGGSPELPYPRRGKTGRKSTKSDPKSESRLALLNLNIYVPRDERFSHVKFSDFLAYALKSVTQVLVPEIASVCDKTINEFDSFEDVFHLYDGSIKLANGHTISKLRDVIPWEMFRELVRNDGERFLKYPLPDILKESRSAWRTDEEFAREMLAGLNPVVISRLQEFPPKSCLDSAKYGNQHSSIRTEHIESNMNG-LNVQEALEQNKLYILDHHDALMPYLTRI 464          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 92/235 (39.15%), Postives = 130/235 (55.32%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVK-AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYV 698
            LG PD      RP+LGG  + PYPRR RTGR    TD  SE R       YVPRDE F  +K   F   ++ ++   +VP++ T +VD   G F  F  I  L+  G+ LP +          P +LVK  +   GD IL    P+ + +DK  W  DEEF+R+ LAG+NP  I  +TE+P KS+LDP  +G   S IT   I   + G ++V++A+   +L+ILD+HD F+P++
Sbjct:  209 LGSPDSGNP--RPILGGSPDTPYPRRGRTGRKPTTTDPDSESRLSLVEQIYVPRDERFGHLKMADFLGYSIKAIAEGIVPAIRT-YVDTTPGEFDSFQDILDLYEGGLKLPDVPALEELRKRFPLQLVKDLLPAAGDYILKLPMPQIIKQDKEAWRTDEEFAREVLAGVNPMMITRLTEFPPKSSLDPSKFGDHTSMITAAHIGSNLEG-LTVQQALDSNRLYILDHHDRFMPFL 439          
BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 92/235 (39.15%), Postives = 131/235 (55.74%), Query Frame = 3
Query:   15 LGDPDKKPELARPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVK-AIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYV 698
            LG+PD      RPVLGG  + PYPRR RTGR    TD  +E R     N YVPRDE F  +K   F   ++ +++  +VP++ T +VD   G F  F  I  L+  G+ LP +          P +LVK  I   GD +L    P  +  DK  W  D+EF+R+ LAG+NP  I  +TE+P +S LDP  YG   S IT   +E+ + G ++V++AI    L+++D+HD F+PY+
Sbjct:  206 LGEPDSGNP--RPVLGGSPDRPYPRRGRTGRKPTKTDPTAESRLSLLENIYVPRDERFGHLKMADFLGYSIKALVDGIVPAIRT-YVDLTPGEFDSFKDILKLYEGGLKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVIREDKKAWMTDDEFAREILAGVNPMVIARLTEFPPRSRLDPARYGDQTSTITAAHVERGLEG-LTVQQAIDGNLLYVVDHHDHFMPYL 436          
The following BLAST results are available for this feature:
BLAST of CX295030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_SOLTU1.843e-3739.33Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_SOYBN4.106e-3739.83Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_SOYBN4.106e-3739.08Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX2_PEA2.038e-3640.66Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_LENCU2.661e-3637.87Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOX1_ORYSJ3.476e-3640.43Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXA_PHAVU1.011e-3538.36Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX5_ARATH1.321e-3538.24Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ORYSJ3.597e-3339.15Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX2_ORYSJ3.597e-3339.15Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05065G12SK DroRLeaf1 Citrus clementina cDNA clone C05065G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295030 ID=CX295030; Name=CX295030; organism=Citrus clementina; type=EST; length=713bp
GATTCGGCCGAGGTCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGG
CCTGTGCTTGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGG
ACGCCCACGGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACT
TTTATGTTCCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTT
TCAGCAAAGACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGA
AACCGCCTTTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTG
ACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGT
TTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGG
AGATAATATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAAT
TCTTTTGGTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTC
AACCCGTATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACT
CGATCCTGAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGA
TTGAAAAAGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAA
AAGAAGTTGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGA
AAAAGTGAGACAA
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