CX295030

Overview
NameCX295030
Unique NameCX295030
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295030 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 84/224 (37.50%), Postives = 127/224 (56.70%), Query Frame = 3 
Query:   48 RPVLGGKQN-PYPRRCRTGRPRCDTDQFSEKREG---NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLG-FPYFSAIDALFNEGVNLPPLKQEGFWNTLLP-RLVKAIEDTG-DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYV 698
            RP+LGG  + PYPRR RT R    +D   E R       YVPRDE F  +K   F   ++ ++   ++P++ T +VD   G F  F  I  L+  G+ LP +          P +L+K +   G D++L    P  +  +K  W  DEEF+R+ LAG+NP  I  +TE+P KS+LDP  +G   S IT E IEK + G ++V++A++  +L+ILD+HD F+P++
Sbjct:  213 RPILGGNSDHPYPRRGRTERKPNASDPSLESRLSLLEQIYVPRDEKFGHLKTSDFLGYSIKAITQGILPAVRT-YVDTTPGEFDSFQDIINLYEGGIKLPKVAALEELRKQFPLQLIKDLLPVGGDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVNPVMITRLTEFPPKSSLDPSKFGDHTSTITAEHIEKNLEG-LTVQQALESNRLYILDHHDRFMPFL 434
The following BLAST results are available for this feature:
BLAST of CX295030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX1_HORVU1.511e-3137.50Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC05065G12SK DroRLeaf1 Citrus clementina cDNA clone C05065G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295030 ID=CX295030; Name=CX295030; organism=Citrus clementina; type=EST; length=713bp
GATTCGGCCGAGGTCTTGGAGATCCAGACAAGAAACCTGAATTAGCAAGG
CCTGTGCTTGGAGGCAAACAAAACCCTTATCCTAGACGTTGCAGAACTGG
ACGCCCACGGTGTGACACAGATCAATTTTCGGAGAAAAGAGAGGGAAACT
TTTATGTTCCAAGGGATGAAGCATTCTCGGAGGTAAAGCAGCTAACATTT
TCAGCAAAGACGGTGTACTCAGTGTTGCATGCGTTGGTACCATCCTTAGA
AACCGCCTTTGTCGATCCTGATCTGGGGTTTCCATACTTCTCTGCTATTG
ACGCACTCTTCAATGAAGGAGTCAACTTGCCTCCACTCAAACAGGAAGGT
TTTTGGAACACACTGCTTCCCAGATTGGTTAAGGCAATTGAGGATACAGG
AGATAATATTTTGCTGTTTGAGACGCCAGAAACAATGGACAGAGACAAAT
TCTTTTGGTTTAGGGATGAGGAATTTTCTAGGCAAACTCTCGCTGGTCTC
AACCCGTATAGCATAAGGTTGATCACGGAATGGCCGTTGAAAAGCACACT
CGATCCTGAAATTTACGGACCACCAGAATCAGCAATTACCACAGAATTGA
TTGAAAAAGAAATTGGAGGAATGATTTCTGTTGAAGAGGCTATAAAACAA
AAGAAGTTGTTCATCTTAGATTACCATGACCTATTTTTACCATATGTGGA
AAAAGTGAGACAA
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