CX295035

Overview
NameCX295035
Unique NameCX295035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC1_TOBAC (Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nicotiana tabacum GN=PDC1 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.357e-93
Identity = 161/183 (87.98%), Postives = 171/183 (93.44%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYT 559
            DYSSVGYSLLLKKEKA+I+QPDRV I NGPAFGCVLM+DFL AL+KRLK N TA+ENYHRIYVPEG P KCEPKE LRVNVLFQHIQ MLS ++ VIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQ+ PEKRVIACIGDGSFQVTAQD+STMLRCGQ+TIIFLINNGGYT
Sbjct:  236 DYSSVGYSLLLKKEKAIIVQPDRVTIGNGPAFGCVLMRDFLAALAKRLKHNPTAFENYHRIYVPEGHPLKCEPKEALRVNVLFQHIQNMLSGDSVVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAAPEKRVIACIGDGSFQVTAQDISTMLRCGQRTIIFLINNGGYT 418          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC3_MAIZE (Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea mays GN=PDC3 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.777e-72
Identity = 127/151 (84.11%), Postives = 136/151 (90.07%), Query Frame = 2
Query:  227 PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCE 679
            P EPLRVNVLF+H+QKML+ ++AVIAETGDSWFNCQKLKLP+GCGYEFQMQYGSIGWSVGA LGY Q    KRVIA IGDGSFQVTAQDVST+LRC Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTG VDAIHNG GKCWT+KV  E
Sbjct:    1 PNEPLRVNVLFKHVQKMLTGDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGALLGYPQGANHKRVIAFIGDGSFQVTAQDVSTILRCEQNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGFVDAIHNGLGKCWTSKVKSE 151          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.634e-49
Identity = 100/214 (46.73%), Postives = 140/214 (65.42%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPE-GQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG 649
            DYS+ G++ +   +K V+ +P R V+ NG  F  V +KD+L  L++++   T A + +  +   E  +    +P  PL    + + ++ +L+  T VIAETGDSWFN Q++KLP G   E++MQ+G IGWSV A  GYA   PE+R I  +GDGSFQ+TAQ+V+ M+R     IIFLINN GYTIEV IHDGPYN IKNW+Y GL++ + NG G
Sbjct:  289 DYSTTGWTDIPDPKKLVLAEP-RSVVVNGIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLME-VFNGNG 500          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.634e-49
Identity = 95/213 (44.60%), Postives = 136/213 (63.85%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG 649
            DYSS G++ L  K   + +  DRV +++   FG VL++DFL  L+K++K+N  +   Y RI     + P   PK  L    + + +Q +++ ET +  +TGDSWF   ++ LP+   +E +MQ+G IGWSV +  GYA   P++ V+  +GDGSFQ T Q+VS M+R     I+FLINN GYTIEVEIHDGPYN IKNW+Y  +V+A + GEG
Sbjct:  300 DYSSNGWTSLPPKANVLHVDVDRVTVSDAE-FGGVLLRDFLHELAKKVKANNASVVEYKRIRPESLEIPMENPKAALNRKEIIRQVQNLVNQETTLFVDTGDSWFGGMRITLPEKARFEIEMQWGHIGWSVPSAFGYAIGAPKRNVVVFVGDGSFQETVQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNRIKNWDYAAIVEAFNAGEG 511          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 9.309e-44
Identity = 88/215 (40.93%), Postives = 131/215 (60.93%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIA-NGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGK 652
            DYS+VG+         ++L  D   ++  G  F  V M +FL+ L+K++       E Y++       P   EPK  L    + + IQ ++ S T + AETGDSWFN  ++KLP G  +E +MQ+G IGWSV + +GYA + PE+R I  +GDGSFQ+T Q++S M+R     +IFL+NN GYTIE++IHDGPYN I+NW++    ++++   GK
Sbjct:  296 DYSTVGWRAAPNPN--ILLNSDYTSVSIPGYVFSRVYMAEFLELLAKKVSKKPATLEAYNKARPQTVVPKAAEPKAALNRVEVMRQIQGLVDSNTTLYAETGDSWFNGLQMKLPAGAKFEVEMQWGHIGWSVPSAMGYAVAAPERRTIVMVGDGSFQLTGQEISQMIRHKLPVLIFLLNNRGYTIEIQIHDGPYNRIQNWDFAAFCESLNGETGK 508          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.108e-42
Identity = 92/213 (43.19%), Postives = 129/213 (60.56%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG 649
            DYS+VG++ +      + +  D V    G  F  V M +FL  L+ ++  N +    Y R+          E +EPL    + + +Q+ML+ +T++  +TGDSWFN  +LKLP G  +E +MQ+G IGWS+ A  GYA   P++  I  +GDGSFQVTAQ+VS M+R      I LINN GYTIEVEIHDG YN IKNW+Y  LV+A ++ +G
Sbjct:  295 DYSTVGWTAV-PNIPLMTVDMDHVTFP-GAHFSRVRMCEFLSHLATQVTFNDSTMIEYKRLKPDPPHVHTAEREEPLSRKEISRQVQEMLTDKTSLFVDTGDSWFNGIQLKLPPGAKFEIEMQWGHIGWSIPAAFGYALRHPDRHTIVLVGDGSFQVTAQEVSQMVRFKVPITIMLINNRGYTIEVEIHDGSYNKIKNWDYAMLVEAFNSTDG 505          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC1_CANGA (Pyruvate decarboxylase OS=Candida glabrata GN=PDC1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 79/213 (37.09%), Postives = 111/213 (52.11%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPK--CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLV 625
            D+++  +S   K +  V    D + I N   F  V MK    AL K L +   A + Y  + VP   P    C+P  PL+   ++  + K L     VI ETG S F   +   P       Q+ +GSIG++ GA LG A +     P+KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH     YN I+NW++  L+
Sbjct:  291 DFNTGSFSYSYKTKNIVEFHSDYIKIRNA-TFPGVQMKF---ALQKLLNAVPEAIKGYKPVPVPARVPENKSCDPATPLKQEWMWNQVSKFLQEGDVVITETGTSAFGINQTPFPNNAYGISQVLWGSIGFTTGACLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIERLIHGEKAGYNDIQNWDHLALL 499          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC6_YEAST (Pyruvate decarboxylase isozyme 3 OS=Saccharomyces cerevisiae GN=PDC6 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.674e-25
Identity = 80/216 (37.04%), Postives = 110/216 (50.93%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPK--CEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP---YNVIKNWNYTGLVDA 631
            D+++  +S   K +  V    D V + N    G V MK    AL   LK      + Y  + VP   P         PL+   L+  + K L     +I+ETG S F   +   PK      Q+ +GSIG++ GATLG A +     P KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH GP   YN I+ W++  L+ A
Sbjct:  291 DFNTGSFSYSYKTKNVVEFHSDYVKVKNATFLG-VQMKF---ALQNLLKVIPDVVKGYKSVPVPTKTPANKGVPASTPLKQEWLWNELSKFLQEGDVIISETGTSAFGINQTIFPKDAYGISQVLWGSIGFTTGATLGAAFAAEEIDPNKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPHAEYNEIQTWDHLALLPA 501          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC5_YEAST (Pyruvate decarboxylase isozyme 2 OS=Saccharomyces cerevisiae GN=PDC5 PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 1.264e-24
Identity = 80/214 (37.38%), Postives = 112/214 (52.34%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQP-PKCEPKE-PLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP---YNVIKNWNYTGLV 625
            D+++  +S   K +  V    D + I N   F  V MK    AL K L +     ++Y  + VP   P  K  P   P++   ++ H+   L     VIAETG S F   +   P       Q+ +GSIG++VGA LG   +     P+KRVI  IGDGS Q+T Q++STM+R G K  IF++NN GYTIE  IH GP   YN I+ W++  L+
Sbjct:  291 DFNTGSFSYSYKTKNIVEFHSDHIKIRNA-TFPGVQMKF---ALQKLLDAIPEVVKDYKPVAVPARVPITKSTPANTPMKQEWMWNHLGNFLREGDIVIAETGTSAFGINQTTFPTDVYAIVQVLWGSIGFTVGALLGATMAAEELDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYIFVLNNNGYTIEKLIH-GPHAEYNEIQGWDHLALL 499          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC1_YEAST (Pyruvate decarboxylase isozyme 1 OS=Saccharomyces cerevisiae GN=PDC1 PE=1 SV=7)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 78/214 (36.45%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   11 DYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCE--PKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSV----PEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGP---YNVIKNWNYTGLV 625
            D+++  +S   K +  V    D + I N   F  V MK  L+ L   L +   A + Y  + VP   P         PL+   ++  +   L     VIAETG S F   +   P       Q+ +GSIG++ GATLG A +     P+KRVI  IGDGS Q+T Q++STM+R G K  +F++NN GYTIE  IH GP   YN I+ W++  L+
Sbjct:  291 DFNTGSFSYSYKTKNIVEFHSDHMKIRNA-TFPGVQMKFVLQKL---LTTIADAAKGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLL 499          
The following BLAST results are available for this feature:
BLAST of CX295035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
PDC1_TOBAC6.357e-9387.98Pyruvate decarboxylase isozyme 1 (Fragment) OS=Nic... [more]
PDC3_MAIZE2.777e-7284.11Pyruvate decarboxylase isozyme 3 (Fragment) OS=Zea... [more]
PDC_ZYMMO5.634e-4946.73Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC3_SCHPO5.634e-4944.60Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
PDC2_SCHPO9.309e-4440.93Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]
PDC_NEUCR5.108e-4243.19Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]
PDC1_CANGA2.303e-2637.09Pyruvate decarboxylase OS=Candida glabrata GN=PDC1... [more]
PDC6_YEAST5.674e-2537.04Pyruvate decarboxylase isozyme 3 OS=Saccharomyces ... [more]
PDC5_YEAST1.264e-2437.38Pyruvate decarboxylase isozyme 2 OS=Saccharomyces ... [more]
PDC1_YEAST8.193e-2436.45Pyruvate decarboxylase isozyme 1 OS=Saccharomyces ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065H06SK DroRLeaf1 Citrus clementina cDNA clone C05065H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295035 ID=CX295035; Name=CX295035; organism=Citrus clementina; type=EST; length=679bp
GAGGATTTATGACTATAGCTCGGTTGGGTACTCTCTTCTTCTCAAGAAGG
AGAAGGCAGTCATTCTGCAGCCTGATCGTGTGGTGATTGCTAATGGACCG
GCATTTGGTTGTGTTTTGATGAAGGATTTCCTCAAAGCACTTTCAAAGCG
GCTCAAAAGCAACACTACTGCTTATGAGAATTACCACAGGATTTATGTTC
CTGAGGGGCAACCTCCGAAGTGTGAACCCAAAGAGCCCTTGAGAGTGAAT
GTTCTGTTCCAACATATACAGAAGATGCTGTCTAGTGAAACTGCTGTGAT
TGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAACTGAAATTGCCTA
AGGGATGCGGGTATGAGTTCCAAATGCAATATGGATCAATTGGTTGGTCT
GTTGGTGCTACTCTTGGATATGCACAGTCTGTGCCAGAGAAGCGTGTCAT
TGCTTGCATAGGTGATGGTAGCTTCCAGGTAACTGCACAAGATGTGTCAA
CAATGCTGCGATGTGGGCAGAAGACTATAATCTTCCTGATTAACAATGGT
GGTTACACCATTGAAGTTGAGATCCATGATGGACCGTACAATGTGATCAA
GAACTGGAACTACACCGGGTTGGTTGATGCAATCCACAATGGCGAAGGCA
AGTGCTGGACAACCAAGGTCTTCTGCGAG
back to top