CX295035

Overview
NameCX295035
Unique NameCX295035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: KDC_MYCS2 (Alpha-keto-acid decarboxylase OS=Mycobacterium smegmatis GN=kdc PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 45/148 (30.41%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  200 PEGQPPKCEPKEP-LRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVDAI 634
            P  Q P   P++  L    L+  + + L+    V+A+ G S++     +L  G  +  Q  + SIG+++ A LG   +  ++R +  IGDG+ Q+T Q++    R G   ++ ++NN GYT+E  IH     YN I  W +T L  A+
Sbjct:  349 PAPQRPAAPPRDAVLTQEALWDRLAEALTPGNVVLADQGTSFYGLAGHRLASGVTFIGQPLWASIGYTLPAALGAGLADRDRRTVLLIGDGAAQLTVQELGAFGREGLTPVVVVVNNNGYTVERAIHGVTARYNDITAWRWTELPAAL 496          
BLAST of CX295035 vs. ExPASy Swiss-Prot
Match: PDC_ASPPA (Pyruvate decarboxylase OS=Aspergillus parasiticus GN=pdcA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 66/236 (27.97%), Postives = 108/236 (45.76%), Query Frame = 2
Query:   17 SSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPL-RVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLG--YAQ----------SVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIH--DGPYNVIKNWNYTGLVD---AIHNGEGKCWTTKV 670
            +S  Y L    EK+V+  P+ + + N   F  + +  F++ L+++L  +      +  ++      P+  P + + +    ++     L +   ++ ETG   +      LP          + SIG+ + A LG  +AQ          S+   R I  IGDGSFQ+T Q++ST++      IIFLINN GYTIE  IH  +  YN +  W Y    +   A  +GE K  T +V
Sbjct:  289 NSYNYFLKPADEKSVLFSPNSIQV-NKDVFRDLPVGYFIEQLTQQLDISRIPTHKHDLVHPSLRTLPEVSPTDLVTQTGGFWKRFSPFLRTGDIILGETGTPGYGVNDFILPPQTRLFKPATWLSIGYMLPAALGASHAQRDLVASDQYHSLSNPRTILFIGDGSFQMTVQELSTIIHQKLNVIIFLINNDGYTIERCIHGRNQAYNDVAPWRYLKAAEFFGADQDGEYKASTWEV 523          
The following BLAST results are available for this feature:
BLAST of CX295035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
KDC_MYCS21.311e-1330.41Alpha-keto-acid decarboxylase OS=Mycobacterium sme... [more]
PDC_ASPPA2.921e-1327.97Pyruvate decarboxylase OS=Aspergillus parasiticus ... [more]

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Properties
Property NameValue
Genbank descriptionC05065H06SK DroRLeaf1 Citrus clementina cDNA clone C05065H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295035 ID=CX295035; Name=CX295035; organism=Citrus clementina; type=EST; length=679bp
GAGGATTTATGACTATAGCTCGGTTGGGTACTCTCTTCTTCTCAAGAAGG
AGAAGGCAGTCATTCTGCAGCCTGATCGTGTGGTGATTGCTAATGGACCG
GCATTTGGTTGTGTTTTGATGAAGGATTTCCTCAAAGCACTTTCAAAGCG
GCTCAAAAGCAACACTACTGCTTATGAGAATTACCACAGGATTTATGTTC
CTGAGGGGCAACCTCCGAAGTGTGAACCCAAAGAGCCCTTGAGAGTGAAT
GTTCTGTTCCAACATATACAGAAGATGCTGTCTAGTGAAACTGCTGTGAT
TGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAACTGAAATTGCCTA
AGGGATGCGGGTATGAGTTCCAAATGCAATATGGATCAATTGGTTGGTCT
GTTGGTGCTACTCTTGGATATGCACAGTCTGTGCCAGAGAAGCGTGTCAT
TGCTTGCATAGGTGATGGTAGCTTCCAGGTAACTGCACAAGATGTGTCAA
CAATGCTGCGATGTGGGCAGAAGACTATAATCTTCCTGATTAACAATGGT
GGTTACACCATTGAAGTTGAGATCCATGATGGACCGTACAATGTGATCAA
GAACTGGAACTACACCGGGTTGGTTGATGCAATCCACAATGGCGAAGGCA
AGTGCTGGACAACCAAGGTCTTCTGCGAG
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