CX295036

Overview
NameCX295036
Unique NameCX295036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORRA (V-type ATP synthase alpha chain OS=Borrelia recurrentis (strain A1) GN=atpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIH 428
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP++N L S+SKY   +E  YE  +         AR  L + +++N+++++VG+D ++  D +    ++LL   YL QN+F   D    F +  +M  NI++
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAINPLDSWSKYRGVVE--YEATE--------YARAFLVKGNEVNQMMRVVGEDGVSIDDFVVYLKSELLDSCYLQQNSFDSVDAAVSFERQNYMF-NILY 519          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORDL (V-type ATP synthase alpha chain OS=Borrelia duttonii (strain Ly) GN=atpA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 48/139 (34.53%), Postives = 81/139 (58.27%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIH 428
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP++N L S+SKY   +E  YE  +         AR  L + +++N+++++VG+D ++  D +    ++LL   YL QN+F   D    F +  +M  NI++
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAINPLDSWSKYRGVVE--YEATE--------YARAFLVKGNEVNQMMRVVGEDGVSIDDFVVYLKSELLDSCYLQQNSFDSVDAAVSFERQNYMF-NILY 519          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORT9 (V-type ATP synthase alpha chain OS=Borrelia turicatae (strain 91E135) GN=atpA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 43/122 (35.25%), Postives = 73/122 (59.84%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP++N L S+SKY   +ES    +          AR  L + +++N+++++VG++ ++ GD +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAINPLESWSKYRGVVESEKTGY----------ARSFLAKGNEINQMMKVVGEEGISIGDFLVYLKSELLDACYLQQNSFDSVD 503          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORGA (V-type ATP synthase alpha chain OS=Borrelia garinii GN=atpA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.683e-14
Identity = 40/122 (32.79%), Postives = 73/122 (59.84%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP+++ L S+SKY   ++S   ++          AR  L + +++N+++++VG++ ++  D +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAISPLESWSKYKGVIDSKKAEY----------ARSFLVKGNEINQMMKVVGEEGISSEDFLIYLKSELLDSCYLQQNSFDSVD 503          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORBZ (V-type ATP synthase alpha chain OS=Borrelia burgdorferi (strain ZS7) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 39/122 (31.97%), Postives = 72/122 (59.02%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP+++ L S+SKY   ++    ++          AR  L + +++N+++++VG++ ++  D +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAISPLESWSKYKGVIDQKKTEY----------ARSFLVKGNEINQMMKVVGEEGISNDDFLIYLKSELLDSCYLQQNSFDSID 503          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORBU (V-type ATP synthase alpha chain OS=Borrelia burgdorferi GN=atpA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 39/122 (31.97%), Postives = 72/122 (59.02%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP+++ L S+SKY   ++    ++          AR  L + +++N+++++VG++ ++  D +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAISPLESWSKYKGVIDQKKTEY----------ARSFLVKGNEINQMMKVVGEEGISNDDFLIYLKSELLDSCYLQQNSFDSID 503          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_BORAP (V-type ATP synthase alpha chain OS=Borrelia afzelii (strain PKo) GN=atpA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.817e-13
Identity = 39/122 (31.97%), Postives = 72/122 (59.02%), Query Frame = 3
Query:   12 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            G+VSP GG+F +PVT ATL +V  F GL ++ +  + FP+++ L S+SKY   ++S   ++           R  L + +++N+++++VG++ ++  D +    ++LL   YL QN+F   D
Sbjct:  392 GSVSPAGGNFEEPVTQATLKVVGAFHGLTRERSDARKFPAISPLESWSKYKGVIDSKKTEY----------VRSFLVKGNEINQMMKVVGEEGISNEDFLIYLKSELLDSCYLQQNSFDSID 503          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA1_TREPA (V-type ATP synthase alpha chain 1 OS=Treponema pallidum GN=atpA1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 40/128 (31.25%), Postives = 68/128 (53.12%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCP 389
            I G VSP GG+F +PVT ATL +V  F GL ++ +  + +P+V+ L S+SKY + L++    +           R  L+R  ++ +++++VG++  +  D +       L   YL QN+F   D   P
Sbjct:  391 IGGTVSPAGGNFEEPVTQATLKVVGAFHGLSRERSDARRYPAVHPLDSWSKYPSVLDARAVAY----------GRSFLRRGAEVEQMMRVVGEEGTSMEDFLVYLKGSFLDSVYLQQNSFDTVDSAVP 508          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_TREDE (V-type ATP synthase alpha chain OS=Treponema denticola GN=atpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 40/124 (32.26%), Postives = 67/124 (54.03%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYD 377
            I G VSP GG+F +PVT ATL +V  F GL ++ +  + +P+++ L S+SKY + L     ++           R  L+R  ++ +++++VG++  +  D I      LL   YL QN+F   D
Sbjct:  391 IGGTVSPAGGNFEEPVTQATLKVVGAFHGLSRERSDARKYPAIHPLDSWSKYPSVLPLEQVKY----------GRSFLRRGTEVEQMMKVVGEEGTSIEDFIIYLKGDLLDAVYLQQNSFDKVD 504          
The following BLAST results are available for this feature:
BLAST of CX295036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
VATA_BORRA8.758e-1534.53V-type ATP synthase alpha chain OS=Borrelia recurr... [more]
VATA_BORDL8.758e-1534.53V-type ATP synthase alpha chain OS=Borrelia dutton... [more]
VATA_BORT91.144e-1435.25V-type ATP synthase alpha chain OS=Borrelia turica... [more]
VATA_BORGA9.683e-1432.79V-type ATP synthase alpha chain OS=Borrelia garini... [more]
VATA_BORBZ2.157e-1331.97V-type ATP synthase alpha chain OS=Borrelia burgdo... [more]
VATA_BORBU2.157e-1331.97V-type ATP synthase alpha chain OS=Borrelia burgdo... [more]
VATA_BORAP2.817e-1331.97V-type ATP synthase alpha chain OS=Borrelia afzeli... [more]
VATA1_TREPA9.063e-1231.25V-type ATP synthase alpha chain 1 OS=Treponema pal... [more]
VATA_TREDE4.498e-1132.26V-type ATP synthase alpha chain OS=Treponema denti... [more]

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Properties
Property NameValue
Genbank descriptionC05065H07SK DroRLeaf1 Citrus clementina cDNA clone C05065H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295036 ID=CX295036; Name=CX295036; organism=Citrus clementina; type=EST; length=670bp
GAGGCATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCT
GTAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAA
GAAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTT
ACTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCG
GATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGA
TGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAG
GAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTT
GCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTC
TGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCAATCAGG
CCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTACACCCTT
ATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACAGAAGTT
TGAGGACCCACAGAAGAGAACAGCTCTGGTTGCTAAATTCAAAAGCTGCA
TGAGGATCTGACCGCTGGTTTCGCGCCTCGAGATGAACTCGATGATGAAG
GTCAGTAGATCTTGTATCAG
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