CX295036

Overview
NameCX295036
Unique NameCX295036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_THEON (V-type ATP synthase alpha chain OS=Thermococcus onnurineus (strain NA1) GN=atpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.531e-40
Identity = 80/172 (46.51%), Postives = 121/172 (70.35%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLG 518
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  +++ ++ +  DP++  +R +A E+LQ+E +L EIV++VG DAL + +K  L  A++LREDYL Q+AF   D +CP  K V MMR I++FY    +AV++G  +D  +I    ++ ++G
Sbjct:  385 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYIDSIQDWWHKNVDPEWRAMRDRAMELLQKEAELQEIVRIVGPDALPDREKAVLIVARMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYERTMEAVDRGVPVD--EIAKLPVREKIG 554          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_THEGJ (V-type ATP synthase alpha chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.531e-40
Identity = 87/194 (44.85%), Postives = 129/194 (66.49%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFE-DPQKRTALV 581
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FYN   +AV++G  +D  +I    ++ ++G +       KFE D +K  AL+
Sbjct:  385 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYLDAVQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYNRTMEAVDRGVPVD--EIARLPVREKIGRM-------KFEPDVEKIRALI 569          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 87/196 (44.39%), Postives = 128/196 (65.31%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFE-DPQKRTALVAK 587
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R KA E+LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR ++ FY     A+ +G  +  ++I    ++  +G +       KFE D +K  AL+ K
Sbjct:  813 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVQDWWHKNVDPEWRRMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPQKQVTMMRVLMTFYERTMDAISRGVPL--EEIAKLPVREEIGRM-------KFEPDIEKIRALIDK 999          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METMJ (V-type ATP synthase alpha chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 81/155 (52.26%), Postives = 110/155 (70.97%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 467
            ++GAVSPPGGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y  AL  +Y+ +  P++  +R  A  VLQ+E +L EIVQLVG DAL + +++T+E A+++RE +L QNA+   D FCP  K   MM+ I H+ +LA  A   GA
Sbjct:  386 VIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYLDALNEWYDKEVSPEWNPLRAWAMGVLQKEAELQEIVQLVGSDALPDEEQVTIEVARMIREIFLQQNAYDAVDTFCPMSKQYDMMKAIKHYADLARTAQTGGA 540          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_META3 (V-type ATP synthase alpha chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.612e-40
Identity = 87/176 (49.43%), Postives = 119/176 (67.61%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 530
            IVGAVSPPGGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y   +E ++ E    D+  IR +A  +LQ+E +L EIVQLVG DAL + +++ LE +++LRED+L Q+AF+  D +C   K   M++ I+ FY+ A  AVEKGA  D   I    +K  +  + Y
Sbjct:  387 IVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLQSYSLYLDDIEDWWKENTAEDWREIRDEAMNLLQKEAELQEIVQLVGPDALPDKERVILEVSRMLREDFLQQDAFSDIDSYCSPMKQYTMLKTIMTFYSKAILAVEKGA--DPADIAKVSVKQDVAKMKY 560          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_THESI (V-type ATP synthase alpha chain OS=Thermococcus sp. (strain KI) GN=atpA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.023e-40
Identity = 87/194 (44.85%), Postives = 128/194 (65.98%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFE-DPQKRTALV 581
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE D +K  AL+
Sbjct:  385 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYVDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALI 569          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRKO (V-type ATP synthase alpha chain OS=Pyrococcus kodakaraensis GN=atpA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.023e-40
Identity = 87/194 (44.85%), Postives = 128/194 (65.98%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFE-DPQKRTALV 581
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE D +K  AL+
Sbjct:  385 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYIDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALI 569          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.342e-39
Identity = 82/182 (45.05%), Postives = 125/182 (68.68%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDL-FYRLVSQ 545
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R KA  +LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR +++FY+   +A+ +G  +  ++I    ++  +G + F R VS+
Sbjct:  764 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL--EEIAKLPVREEIGRMKFERDVSK 943          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METJA (V-type ATP synthase alpha chain OS=Methanocaldococcus jannaschii GN=atpA PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 86/176 (48.86%), Postives = 118/176 (67.05%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 530
            IVGAVSPPGGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y     E +     PD+  +R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+AF   D +CP  K   M++ I+ FY  A +AVE+  G++  KI    +K  +  + Y
Sbjct:  388 IVGAVSPPGGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLQSYSLYIDDVTEWWNTNTGPDWRQLRDEAMSLLQKEAELQEIVQLVGPDALPDRERVILEVARMLREDFLQQDAFDEVDTYCPPMKQYLMLKIIMTFYQEALKAVER--GVEPAKILGVSVKQDIARMKY 561          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_STAMF (V-type ATP synthase alpha chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.989e-39
Identity = 78/158 (49.37%), Postives = 112/158 (70.89%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 476
            I+GAVSPPG DFS+PVT ATL IV+  + LD  LA R+H+P++NWLISYS Y     + +++  DP +  +R KA  +LQ+E +L E+V+LVG +AL E DK+ LE A+++RED+L QNAF   D +CP  K+V MM+ I+ FY L  +A+++G  M+
Sbjct:  385 IMGAVSPPGADFSEPVTQATLRIVRALYALDVNLAYRRHYPAINWLISYSLYVDNVTDWWHKNIDPSWRELREKALAILQKEAELEELVRLVGAEALPEEDKLLLEVARMIREDFLQQNAFHEIDTYCPPRKAVLMMKAIMLFYELGLEAIKRGISME 542          
The following BLAST results are available for this feature:
BLAST of CX295036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
VATA_THEON3.531e-4046.51V-type ATP synthase alpha chain OS=Thermococcus on... [more]
VATA_THEGJ3.531e-4044.85V-type ATP synthase alpha chain OS=Thermococcus ga... [more]
VATA_PYRFU4.612e-4044.39V-type ATP synthase alpha chain OS=Pyrococcus furi... [more]
VATA_METMJ4.612e-4052.26V-type ATP synthase alpha chain OS=Methanoculleus ... [more]
VATA_META34.612e-4049.43V-type ATP synthase alpha chain OS=Methanococcus a... [more]
VATA_THESI6.023e-4044.85V-type ATP synthase alpha chain OS=Thermococcus sp... [more]
VATA_PYRKO6.023e-4044.85V-type ATP synthase alpha chain OS=Pyrococcus koda... [more]
VATA_PYRHO1.342e-3945.05V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_METJA1.752e-3948.86V-type ATP synthase alpha chain OS=Methanocaldococ... [more]
VATA_STAMF2.989e-3949.37V-type ATP synthase alpha chain OS=Staphylothermus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05065H07SK DroRLeaf1 Citrus clementina cDNA clone C05065H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295036 ID=CX295036; Name=CX295036; organism=Citrus clementina; type=EST; length=670bp
GAGGCATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCT
GTAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAA
GAAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTT
ACTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCG
GATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGA
TGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAG
GAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTT
GCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTC
TGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCAATCAGG
CCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTACACCCTT
ATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACAGAAGTT
TGAGGACCCACAGAAGAGAACAGCTCTGGTTGCTAAATTCAAAAGCTGCA
TGAGGATCTGACCGCTGGTTTCGCGCCTCGAGATGAACTCGATGATGAAG
GTCAGTAGATCTTGTATCAG
back to top