CX295036

Overview
NameCX295036
Unique NameCX295036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METTP (V-type ATP synthase alpha chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=atpA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.904e-39
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 476
            +VGAVSPPGGDF++PVT  TL IV+VFW LD +L QR+HFPS+NWL SYS Y   LES+Y E   PD+  ++ +A  +LQ   +L EIV LVG DAL E  ++TLE A+++   +LAQ+AF P D FCP+ K   +++ I+ + + A  A+ +G  +D
Sbjct:  380 VVGAVSPPGGDFTEPVTQNTLRIVKVFWALDSRLTQRRHFPSINWLDSYSLYEKDLESWYAENVAPDWNQLKRRAMAILQENAELEEIVMLVGSDALPEDQQLTLEVARMIINFWLAQSAFHPVDTFCPYKKQYDLLKAILTYRDYAFDALRRGVAVD 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_DESSY (V-type ATP synthase alpha chain OS=Desulfurococcus sp. (strain SY) GN=atpA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.904e-39
Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFE-DPQKRTALV 581
            ++GAVSPPGGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  +++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    +AV++G  +D  +I    ++ ++G +       KFE D +K  AL+
Sbjct:  385 VIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYLDSIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYERTMEAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDIEKIRALI 569          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METAC (V-type ATP synthase alpha chain OS=Methanosarcina acetivorans GN=atpA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 80/153 (52.29%), Postives = 106/153 (69.28%), Query Frame = 3
Query:    9 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 464
            +GAVSPPGGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y   L   F E   PD++ +R KA ++LQ E +L EIVQLVG DAL E  ++ LE  +++RE YL QNAF P D + PF K   +M+ I+ + + A  A++ G
Sbjct:  381 IGAVSPPGGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKEDLNDWFTENVAPDYVAMREKAMDMLQTESELQEIVQLVGSDALPEEQQLLLEITRMIREIYLQQNAFHPIDTYSPFAKQYKIMQAIMKYGDAAMDALKSG 533          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_STRSV (V-type ATP synthase alpha chain OS=Streptococcus sanguinis (strain SK36) GN=atpA PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 80/154 (51.95%), Postives = 110/154 (71.43%), Query Frame = 3
Query:    9 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 467
            +GAVSPPGGD S+PVT  TL IV+VFWGLD +LAQR+HFP++NWL SYS Y   + ++ +Q +   +    TKA  +LQ+E +L EIV+LVG D+L+E D++T+  AK++REDYL QNAF   D +  F K V ++ NI+ F   AN+A+E GA
Sbjct:  388 IGAVSPPGGDISEPVTQNTLRIVKVFWGLDAQLAQRRHFPAINWLSSYSLYLDEVGAYIDQHEKIAWAEKVTKAMNILQKESELQEIVRLVGLDSLSEKDRLTMNAAKMIREDYLQQNAFDDVDTYTSFKKQVALLSNILTFDAEANRALELGA 541          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_STRGC (V-type ATP synthase alpha chain OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=atpA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.659e-39
Identity = 80/154 (51.95%), Postives = 110/154 (71.43%), Query Frame = 3
Query:    9 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 467
            +GAVSPPGGD S+PVT  TL IV+VFWGLD +LAQR+HFP++NWL SYS Y   + ++ +Q +   +    TKA  +LQ+E +L EIV+LVG D+L+E D++T+  AK++REDYL QNAF   D +  F K V ++ NI+ F   AN+A+E GA
Sbjct:  388 IGAVSPPGGDISEPVTQNTLRIVKVFWGLDAQLAQRRHFPAINWLSSYSLYLDEVGAYIDQHEKIAWAEKVTKAMNILQKESELQEIVRLVGLDSLSEKDRLTMNAAKMIREDYLQQNAFDDVDTYTSFKKQVALLSNILTFDAEANRALELGA 541          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METS3 (V-type ATP synthase alpha chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 85/176 (48.30%), Postives = 114/176 (64.77%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 530
            +VGAVSPPGGD S+PVT  TL I +VFW LD  LA ++HFPS++WL SYS Y  ++E ++ E    D+   R +A  +LQ+E +L EIVQLVG DAL E D+ TLET ++LRED+L QNAF   D +CP  K   M++ I+ F+  A  AV  G G+  Q I    +K  +G + Y
Sbjct:  387 VVGAVSPPGGDLSEPVTQNTLRICKVFWALDASLADKRHFPSIDWLQSYSLYVDSIEGWWAENVAADWRETRDQAMILLQKESELQEIVQLVGPDALPEADQATLETTRMLREDFLQQNAFDDIDTYCPPVKQYNMLKTILLFHKEALAAV--GRGVPIQNIVALPVKEEIGKMKY 560          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA1_METHJ (V-type ATP synthase alpha chain 1 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.697e-39
Identity = 84/176 (47.73%), Postives = 118/176 (67.05%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 530
            ++GAVSPPGGDFS+PVT  TL IV+ FW LD KL+QR+HFP++NWL SYS Y   L  +Y E   P++  +RT A EVLQ+E +L EIVQLVG DAL + +++T+E A++LRE +L QNAF P D +C   K   +++ I  + + A  A++  AG+   +IT    K+ L  + Y
Sbjct:  383 VIGAVSPPGGDFSEPVTQNTLRIVKCFWALDAKLSQRRHFPAINWLNSYSLYLDTLSQYYDENVSPEWNPLRTWAMEVLQKEAELQEIVQLVGSDALPDEEQVTIEVARMLREIFLQQNAFDPVDTYCDMTKQFDILKAIRFYSDQAYAALK--AGVITSQITGLKAKNDLPQIKY 556          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_METST (V-type ATP synthase alpha chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=atpA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.937e-38
Identity = 83/176 (47.16%), Postives = 116/176 (65.91%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 530
            +VGAVSPPGGD S+PVT  TL I +VFW LD  LA R+HFPS+NWL SYS Y  ++ +++  Q   D+ ++R  A  +LQ+E +LNEIVQLVG DAL + D++TLE+A++LRED+L QNAF   D +C   K   M++ I+ +   A  A+  GA  D  K+    ++  LG + Y
Sbjct:  386 VVGAVSPPGGDLSEPVTQNTLRIAKVFWALDASLADRRHFPSINWLNSYSLYVDSITNWWNSQIGSDWRDLRNTAMALLQKESELNEIVQLVGPDALPQKDRVTLESARMLREDFLQQNAFDDTDTYCSPSKQYNMLKTILLYNTTAQSALADGA--DINKLVNLDVRVDLGKMKY 559          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_UNCMA (V-type ATP synthase alpha chain OS=Uncultured methanogenic archaeon RC-I GN=atpA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.530e-38
Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 3
Query:    6 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGM 473
            ++GAVSP GGD S+PVT  TL IV+VFW LD KLAQR+HFPS+NWL SYS Y  +L+ +Y++   P++  ++ ++ E+LQRE +L EIVQLVG DAL E  ++T+E A+++RE +L QNA+   D +C   K + M+++I+ F   A  A+  G  M
Sbjct:  381 VIGAVSPAGGDISEPVTQNTLRIVKVFWALDAKLAQRRHFPSINWLNSYSLYQDSLKDWYDKNISPEWNQLKAESMELLQRESELQEIVQLVGSDALPEDQQLTIEIARMIREIFLQQNAYHEVDTYCSLDKQLKMLKSIMQFGAYARTALASGVPM 537          
BLAST of CX295036 vs. ExPASy Swiss-Prot
Match: VATA_STRPI (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.530e-38
Identity = 80/154 (51.95%), Postives = 108/154 (70.13%), Query Frame = 3
Query:    9 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFD-PDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 467
            +GAVSPPGGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y  ++ ++ +  +  D+ +  T+A   LQRE  L EIV+LVG D+L+E +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  388 IGAVSPPGGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDDKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSENERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          
The following BLAST results are available for this feature:
BLAST of CX295036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
VATA_METTP3.904e-3949.37V-type ATP synthase alpha chain OS=Methanosaeta th... [more]
VATA_DESSY3.904e-3943.81V-type ATP synthase alpha chain OS=Desulfurococcus... [more]
VATA_METAC5.099e-3952.29V-type ATP synthase alpha chain OS=Methanosarcina ... [more]
VATA_STRSV6.659e-3951.95V-type ATP synthase alpha chain OS=Streptococcus s... [more]
VATA_STRGC6.659e-3951.95V-type ATP synthase alpha chain OS=Streptococcus g... [more]
VATA_METS38.697e-3948.30V-type ATP synthase alpha chain OS=Methanobrevibac... [more]
VATA1_METHJ8.697e-3947.73V-type ATP synthase alpha chain 1 OS=Methanospiril... [more]
VATA_METST1.937e-3847.16V-type ATP synthase alpha chain OS=Methanosphaera ... [more]
VATA_UNCMA2.530e-3848.41V-type ATP synthase alpha chain OS=Uncultured meth... [more]
VATA_STRPI2.530e-3851.95V-type ATP synthase alpha chain OS=Streptococcus p... [more]

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Properties
Property NameValue
Genbank descriptionC05065H07SK DroRLeaf1 Citrus clementina cDNA clone C05065H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295036 ID=CX295036; Name=CX295036; organism=Citrus clementina; type=EST; length=670bp
GAGGCATTGTTGGTGCAGTTTCTCCTCCTGGAGGAGATTTCTCAGATCCT
GTAACATCTGCCACCCTCAGCATTGTGCAGGTCTTCTGGGGTCTGGATAA
GAAACTTGCGCAGAGAAAGCATTTTCCTTCTGTAAACTGGCTTATTTCTT
ACTCGAAGTATTCAACAGCATTAGAGTCTTTCTATGAGCAATTTGATCCG
GATTTTATTAACATCAGGACAAAGGCTAGAGAGGTGCTGCAGAGAGAAGA
TGACCTGAATGAAATTGTGCAACTTGTCGGAAAGGATGCTTTGGCTGAAG
GAGATAAGATTACGCTAGAGACTGCTAAGCTTTTGAGGGAGGACTATCTT
GCTCAGAACGCATTTACTCCATATGACAAGTTCTGCCCTTTCTACAAGTC
TGTTTGGATGATGCGTAACATTATCCATTTCTATAACTTGGCCAATCAGG
CCGTAGAGAAAGGAGCTGGTATGGATGGTCAGAAGATAACTTACACCCTT
ATCAAGCATCGGCTGGGAGATCTATTTTACAGATTAGTATCACAGAAGTT
TGAGGACCCACAGAAGAGAACAGCTCTGGTTGCTAAATTCAAAAGCTGCA
TGAGGATCTGACCGCTGGTTTCGCGCCTCGAGATGAACTCGATGATGAAG
GTCAGTAGATCTTGTATCAG
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