CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.775e-59
Identity = 119/236 (50.42%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V  E+LG A K+ + K+ TTIV      D +  R  QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DAL+AT+AA            L R SS +  +  T DND+++VG +IV++AL  PL+ IA NAG +G+V++ KVL ++ + +G++A  G Y+DL+AAGIIDPTKVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDIGIKLESVTLEMLGRAKKIHIEKENTTIVEGAGNSDDIKGRCNQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALARASSALKGL--TFDNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.848e-59
Identity = 122/236 (51.69%), Postives = 169/236 (71.61%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIA+LT G VI ++ G+ L+ V  + LG A K+ +TKD TTIV +G+ + AV  R AQI+  IE  + +Y+REKL ER+AKLSGGVAVI+VGA TETELK++KLR+EDA+NATKAA            LL L++ +    ++L + EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+
Sbjct:  277 APGFGDRRKAMLQDIAVLTDGEVISEDTGIKLENVTTDQLGKARKMTITKDNTTIVAEGN-EAAVKARCAQIKQQIEETDSEYDREKLQERLAKLSGGVAVIKVGAATETELKDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSL-SGEEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASI 509          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.156e-58
Identity = 120/240 (50.00%), Postives = 158/240 (65.83%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFG+R+   L+DI ILTGG  I +++G+ L+ V  E LG A +V + KD TTIV        +  R+ Q+R  I+    DY+REKL ER+AKL+GGVAVI+VGA TETE+KEKK RVEDAL+AT+AA            LLR +  +   K  +D DE+ +G  IVKRA   PL+ I  N+G  G++V +KV  + N+ YGYNAAT  YEDL+AAG+IDPTKV R  L+HA+S+
Sbjct:  272 CAVKAPGFGDRRKAMLEDIGILTGGKPIMEDIGVKLEGVRLEDLGRAKRVTVDKDNTTIVDGAGNPKGIEGRIKQLRAQIDETTSDYDREKLQERLAKLAGGVAVIKVGAATETEMKEKKARVEDALHATRAAVEEGIVPGGGVALLRAAKALATFK--VDGDEQ-IGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASI 508          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_PHOPR (60 kDa chaperonin OS=Photobacterium profundum GN=groL PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.156e-58
Identity = 122/236 (51.69%), Postives = 161/236 (68.22%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIA+LT GTVI +E+GL L+KV  E LG A ++ +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R +SKV A     DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y D++A GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKSMLQDIAVLTAGTVISEEIGLELEKVQLEDLGQAKRITITKENTTIIDGAGEETMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVQDALHATRAAVEEGVVAGGGVALIRAASKVAASGLEGDNEEQNVGIRVALRAMESPLRQIVKNAGDEDSVVANNVRAGEGN-YGYNAATGVYGDMIAMGILDPTKVTRSALQFAASV 512          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_RHORT (60 kDa chaperonin 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.509e-58
Identity = 120/236 (50.85%), Postives = 164/236 (69.49%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V  ++LG A  V +TKD TTIV     +  +  R AQIR  IE+   DY+REKL ER+AKLSGGVAVI+VG  +E E+KEKK RV+DA++AT+AA            LL  +  +DA+     N ++KVG +IV+RAL  P++ IA+NAGV+G+VV+ K+L S +  +GYNA TG YE+L+  G+IDPTKVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLETVTLDMLGTAKTVTITKDNTTIVDGAGVKADIDARCAQIRATIEDTTSDYDREKLQERLAKLSGGVAVIRVGGASEVEVKEKKDRVDDAMHATRAAVEEGIIAGGGVALLHAAKALDALSPA--NADQKVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLESSDADFGYNAQTGVYENLVKVGVIDPTKVVRTALQGAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.971e-58
Identity = 121/242 (50.00%), Postives = 163/242 (67.36%), Query Frame = 2
Query:    2 RDCCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            + C   APGFGER+   L DIAILTGG V  +E+G+ L+ +  E LG A  V + KD T I+G     +A+ KR+AQI+  IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ D EK+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+
Sbjct:  270 QSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGD-EKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THEP1 (60 kDa chaperonin OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.971e-58
Identity = 121/242 (50.00%), Postives = 163/242 (67.36%), Query Frame = 2
Query:    2 RDCCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            + C   APGFGER+   L DIAILTGG V  +E+G+ L+ +  E LG A  V + KD T I+G     +A+ KR+AQI+  IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ D EK+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+
Sbjct:  270 QSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGD-EKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.971e-58
Identity = 121/242 (50.00%), Postives = 163/242 (67.36%), Query Frame = 2
Query:    2 RDCCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            + C   APGFGER+   L DIAILTGG V  +E+G+ L+ +  E LG A  V + KD T I+G     +A+ KR+AQI+  IE    +YE+E L ER+AKL+GGVAVI+VGA TETELKEKK R+EDAL+AT+AA           TLLR    V+ + E L+ D EK+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+
Sbjct:  270 QSCAVKAPGFGERRKAMLQDIAILTGGQVASEELGINLEDLTLEDLGRADLVRVKKDETIIIGGKGDPEAIKKRIAQIKAQIEETTSEYEKETLQERMAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGD-EKIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_THEYD (60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.574e-58
Identity = 120/240 (50.00%), Postives = 158/240 (65.83%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFGER+   L+DIAILTGGTVI +++GL L+ V  E LG A K+++ KD TTIV        +  R+ QI+  I+    DY+REKL ER+AKL+GGVA I VGA TE E+KEKK RVEDALNAT+AA            LLR    ++ IK   +N ++++GA+IVK+AL  P+K I  NAGV  +++ EKV  + N  YGY+A    + D+M AGIIDPTKV R  L++A+SV
Sbjct:  274 CAVKAPGFGERRKAMLEDIAILTGGTVISEDIGLKLENVKVEDLGKAKKIIIDKDNTTIVEGAGDPQKIQARIKQIKVQIDETTSDYDREKLQERLAKLAGGVARINVGAATEAEMKEKKARVEDALNATRAAVEEGIVPGGGVALLRCQKALEKIK--FENHDQQLGAEIVKKALEEPIKQIIANAGVEATLIVEKVKENKNINYGYDAYAEKFVDMMEAGIIDPTKVTRTALQNAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.574e-58
Identity = 117/236 (49.58%), Postives = 166/236 (70.34%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++G+ L+ V  ++LG A KV +TK+ TT+V     +  +  R +QIR  IE+   DY+REKL ER+AKL+GGVAVI+VG  TETE+KEKK RV+DA++AT+AA            LL     +D++K    N ++ VG +IV+RAL  P++ IA+NAGV+G+VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+
Sbjct:  278 APGFGDRRKAMLEDIAILTGGQVISEDLGIKLENVTIDMLGTAKKVTITKEETTLVDGAGDKKDIEARCSQIRANIEDTSSDYDREKLQERLAKLAGGVAVIKVGGATETEVKEKKDRVDDAMHATRAAVEEGVVAGGGVALLHAIRSLDSVKGA--NPDQNVGIEIVRRALQAPVRQIAENAGVDGAVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASI 511          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_GLUOX6.775e-5950.4260 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH601_GLOVI8.848e-5951.6960 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_SOLUE1.156e-5850.0060 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_PHOPR1.156e-5851.6960 kDa chaperonin OS=Photobacterium profundum GN=g... [more]
CH601_RHORT1.509e-5850.8560 kDa chaperonin 1 OS=Rhodospirillum rubrum (stra... [more]
CH60_THESQ1.971e-5850.0060 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]
CH60_THEP11.971e-5850.0060 kDa chaperonin OS=Thermotoga petrophila (strain... [more]
CH60_THEMA1.971e-5850.0060 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH60_THEYD2.574e-5850.0060 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH602_RHORT2.574e-5849.5860 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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