CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_PSEE4 (60 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIA LTGG VI +E+GL+L+    E LGNA +V+L+K+ TTI+        +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R  + +  +K   DN+E+ VG  +++RA+  PL+ I  NAG   SVV++KV     + +GYNAATG Y D++  GI+DP KV R  L+ A+S+
Sbjct:  278 APGFGDRRKAMLQDIATLTGGQVISEEIGLSLETATLEHLGNAKRVILSKENTTIIDGAGADGDIEARVKQIRAQIEETSSDYDREKLQERLAKLAGGVAVIKVGAGTEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALAAIADLKG--DNEEQNVGIALLRRAVEAPLRQITANAGDEPSVVADKVKQGSGN-FGYNAATGEYGDMIEMGILDPAKVTRSALQAAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_PELLD (60 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 115/241 (47.72%), Postives = 156/241 (64.73%), Query Frame = 2
Query:    8 CCS*APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAG-VNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            C   APGFG+R+   L+DIAILTGGTVI +E G  L+      LG A+++ + KD TTIV    TQD +  R+ +I+  I+ +  DY+ EKL ER+AKLSGGVAV+ +GA TE E+KEKK RVEDAL+AT+AA            L+R    +       DN+++K G DI++RAL  PL+ I  N G  +G+VV E+V   +   +G+NA T  YEDL+AAG++DPTKV R  LE+A+SV
Sbjct:  274 CAVKAPGFGDRRKAMLEDIAILTGGTVISEEKGYKLENATVNYLGQAARITVDKDNTTIVEGKGTQDEIKARINEIKGQIDKSTSDYDTEKLQERLAKLSGGVAVLNIGASTEVEMKEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLS--NAIADNEDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLERVKQGEG-DFGFNARTEQYEDLVAAGVVDPTKVTRSALENAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 108/236 (45.76%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILT GT+I +E+G+ L+ V  ++LG A ++ + K++TTI+     +  +  R+AQI++ I     DY+REK+ ER+AKL+GGVAVI+VG  +E E+KEKK RV+DALNAT+AA            LLR    ++ +  T++N ++K G DIV++A+  P + I  N+G +G+VV  K++ + ++ YGYNA T  Y DL+  GIIDPTKVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTSGTLISEEIGIKLENVTLQMLGRAKRIRIDKESTTIIDGAGAKGEIEARIAQIKSQIAETTSDYDREKMQERLAKLAGGVAVIRVGGASEVEVKEKKDRVDDALNATRAAVEEGVLPGGGVALLRAIKALEGL--TVENADQKTGVDIVRKAIQTPARQIVDNSGGDGAVVVGKLIENPSYAYGYNAQTDEYGDLVKLGIIDPTKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_LACZE (60 kDa chaperonin OS=Lactobacillus zeae GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 118/236 (50.00%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIA LTGGTVI  ++GL L     E LG A KV +TKD TTIV    ++DA+++RV  I+  I++   D++REKL ER+AKL+GGVAV++VGA TETELKE+K R+EDALNAT+AA            L+ +   V A+KE     + + G +IV RAL  P++ IA+NAG  GSV+ E+ L  +    GYNAAT  +ED+  +GIIDPTKV R  L++A+SV
Sbjct:  276 APGFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVLPAVAALKE---EGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQ-LKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSALQNAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 118/236 (50.00%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIA LTGGTVI  ++GL L     E LG A KV +TKD TTIV    ++DA+++RV  I+  I++   D++REKL ER+AKL+GGVAV++VGA TETELKE+K R+EDALNAT+AA            L+ +   V A+KE     + + G +IV RAL  P++ IA+NAG  GSV+ E+ L  +    GYNAAT  +ED+  +GIIDPTKV R  L++A+SV
Sbjct:  276 APGFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVLPAVAALKE---EGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQ-LKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSALQNAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 118/236 (50.00%), Postives = 159/236 (67.37%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIA LTGGTVI  ++GL L     E LG A KV +TKD TTIV    ++DA+++RV  I+  I++   D++REKL ER+AKL+GGVAV++VGA TETELKE+K R+EDALNAT+AA            L+ +   V A+KE     + + G +IV RAL  P++ IA+NAG  GSV+ E+ L  +    GYNAAT  +ED+  +GIIDPTKV R  L++A+SV
Sbjct:  276 APGFGDRRKAQLEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALVDVLPAVAALKE---EGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQ-LKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSALQNAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIA+LTGG V  D+ G  L+ +    LG A ++V+ K+ TT+V      + +  RV QIR  IE++  DY+REKL ER+AKL GGVAV+ VGA TE E+KEKK RVEDALNAT+AA            L+R++  +  IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V EKV    +  +G+NAATG YEDL+ AG+IDP KV R  L++A+SV
Sbjct:  278 APGFGDRRKAMLQDIAVLTGGQVASDDTGSKLENMTLAELGTAKRIVIDKENTTVVDGAGKSEDIKARVKQIRAQIEDSTSDYDREKLQERLAKLVGGVAVVHVGAATEVEMKEKKDRVEDALNATRAAVEEGIVPGGGTALIRVAKVLCDIKPA--DDDELAGVNIIRRAIEEPLRQIALNAGFEGSIVVEKVREGKD-GFGFNAATGEYEDLIKAGVIDPKKVTRTALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_BACHD (60 kDa chaperonin OS=Bacillus halodurans GN=groL PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 115/236 (48.73%), Postives = 158/236 (66.95%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGG VI +++GL L       LG ASKVV+TK+ TTIV      D ++ RV QI+  IE    D+++EKL ER+AKL+GGVAV++VGA TETE+KE+KLR+EDALN+T+AA            L+ +   V +I       +E  G +IV RAL  P++ IA NAG+ GSV+ E+ L  +   +G+NAATG + +++ AGI+DPTKV R  L+HA+SV
Sbjct:  276 APGFGDRRKAMLEDIAILTGGEVITEDLGLDLKSANITQLGRASKVVVTKENTTIVEGAGESDKIAARVNQIKAQIEETTSDFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVIKAVSSIGA---EGDEATGVNIVLRALEEPVRQIAHNAGLEGSVIVER-LKKEEAGFGFNAATGEWVNMVEAGIVDPTKVTRSALQHAASV 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH603_NITWN (60 kDa chaperonin 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 116/236 (49.15%), Postives = 152/236 (64.41%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILT G +I DE+G+ L+ V   +LG A KV++ K+ TTIV     +  +  RV QIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L +    +G++A    Y D++A GIIDP KVVR  L+ ASS+
Sbjct:  278 APGFGDRRKAMLEDIAILTSGQLISDELGMKLENVTLNMLGRAKKVLIDKENTTIVNGAGKKKDIEARVGQIRARIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKEKKDRVEDALNATRAAVEEGIVPGGGTALLRARKAVGRINN--DNSDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKTETFGFDAQKEEYVDMVAKGIIDPAKVVRTALQDASSI 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH603_BURCM (60 kDa chaperonin 3 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL3 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.727e-54
Identity = 118/236 (50.00%), Postives = 153/236 (64.83%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTG TVI +E G  L K   E LG+A +V + K+ T I+     Q+ +  RV  IRT I+    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            LLR  S   ++K    N ++  G  IV RAL  PL++IA NAG   SVV  KVL    + +GYNAATG Y DL+ AG++DPTKV R  L++A+S+
Sbjct:  278 APGFGDRRKAMLEDIAILTGATVISEETGKQLQKASLEDLGSAKRVEVRKEDTIIIDGAGDQERIEARVKSIRTQIDETTSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSTATSLKGA--NSDQDAGIQIVLRALEAPLRVIASNAGDEPSVVIAKVLEGKGN-FGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASI 510          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEE41.727e-5448.7360 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]
CH60_PELLD1.727e-5447.7260 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH60_METSB1.727e-5445.7660 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_LACZE1.727e-5450.0060 kDa chaperonin OS=Lactobacillus zeae GN=groL PE... [more]
CH60_LACCB1.727e-5450.0060 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC31.727e-5450.0060 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_DESDA1.727e-5448.7360 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_BACHD1.727e-5448.7360 kDa chaperonin OS=Bacillus halodurans GN=groL P... [more]
CH603_NITWN1.727e-5449.1560 kDa chaperonin 3 OS=Nitrobacter winogradskyi (s... [more]
CH603_BURCM1.727e-5450.0060 kDa chaperonin 3 OS=Burkholderia ambifaria (str... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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