CX295040

Overview
NameCX295040
Unique NameCX295040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_AGRVS (60 kDa chaperonin OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=groL PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 117/236 (49.58%), Postives = 162/236 (68.64%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILTGGTVI +++G+ L+ V  ++LG A K+ +TK+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K R++DALNAT+AA            LLR S+K+  +K    ND+++ G +IV+RAL   ++ IA NAG   S++  K+L  DN  YGYNA TG + D++A GI+DP KVVR  L++A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTGGTVISEDLGIKLETVTLDMLGRAKKISITKENTTIVDGAGQKSDIEGRVAQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGSTEIEVKERKDRIDDALNATRAAVQEGIVPGGGTALLRSSTKI-TVKGV--NDDQEAGINIVRRALQSLVRQIATNAGDEASIIVGKILDKDNDNYGYNAQTGEFGDMIAMGIVDPVKVVRTALQNAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 117/236 (49.58%), Postives = 158/236 (66.95%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L+DIAILT GTVI +++G+ L+ V   +LG A KV + K+ TTI+    ++  +  R AQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RV+DAL+AT+AA            LLR    +D+IK    ND+++VG DIV+RA+  P++ IA+NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SV
Sbjct:  278 APGFGDRRKAMLEDIAILTAGTVISEDLGIKLENVTLNMLGRAKKVAIEKENTTIIDGAGSKAELDGRTAQIRAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALHATRAAVEEGILPGGGVALLRAVKALDSIKTA--NDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_VIBPA (60 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=groL1 PE=3 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 121/236 (51.27%), Postives = 161/236 (68.22%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +E+GL L+KV  E LG A +V +TK+ +TI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  P++ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGTVISEEIGLELEKVTLEDLGQAKRVSITKENSTIIDGAGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEG--DNEEQNVGIRVALRAMEAPIRQITKNAGDEDSVVANNVKAGEG-SYGYNAATGEYGDMLEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_SYNSC (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9605) GN=groL1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.278e-57
Identity = 124/236 (52.54%), Postives = 163/236 (69.07%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            AP FGER+   L DIAILTGGT+I ++  + LDKV  E LG A +V ++K+ TTIV +   + AVS+RV+ IR  +E  E DY+REKL ERIAKL+GGVAVI+VGA TETELK +KLR+EDALNAT+AA           TLL+L+  +DA+  +L N +++ G +IV+RAL  P+  IA NAG NG VV   + SS     G+NA +G YEDLMAAGI+D  KVVR  ++ + S+
Sbjct:  276 APSFGERRKAALADIAILTGGTLISEDKAMTLDKVTLEDLGKARRVTISKENTTIVANDDHRQAVSERVSAIRRELEATESDYDREKLQERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAVEEGIVAGGGSTLLQLADSLDALASSL-NGDQRTGVEIVQRALTAPIHQIATNAGQNGDVVIAGMRSSGQ---GFNALSGVYEDLMAAGIVDAAKVVRLAVQDSISI 507          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +EVGL L+KV  E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  P++ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGMGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEG--DNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVKAGEG-SYGYNAATGEYGDMLEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 116/236 (49.15%), Postives = 157/236 (66.53%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+ + L DIAILTGGTVI +E+GL L+ +    LG A  V + K+ T IVG      A+ +R+AQI+  IEN   DYE+E L ER+AKLSGGVAVI+ GA TETELKEKK R+EDAL+AT+AA           TLLR    V+    TL  D EK+GA +V ++L  P+K I +NAG+  +++ EK++  D+ KYGY+     Y ++  +GIIDPTKV R  L++A+S+
Sbjct:  276 APGFGDRRKEMLRDIAILTGGTVISEEIGLTLEDISINDLGQADLVRVAKEDTIIVGGKGEPTAIKERIAQIKAQIENTSSDYEKETLQERLAKLSGGVAVIKAGAATETELKEKKHRIEDALSATRAAVEEGIVAGGGVTLLRAKKAVEEFANTLSGD-EKIGAQLVAKSLDAPVKQIIRNAGLEPAIIIEKIIEKDDSKYGYDVLKERYVNMFESGIIDPTKVTRSALQNAASI 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH60_ENTS8 (60 kDa chaperonin OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=groL PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 121/236 (51.27%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RV QIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R+++K+  +  T  N+++ VG  +  RA+  PL+ I  NAG   SVV+  V + D + YGYNAAT  Y +++  GI+DPTKV R  L++ASSV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGDESAIQGRVGQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAKLTEL--TGQNEDQNVGIKVALRAMEAPLRQIVSNAGEEPSVVANNVKAGDGN-YGYNAATEEYGNMIDMGILDPTKVTRSALQYASSV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 115/236 (48.73%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG  I +++G+ L+ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR S  +  I+    ND++K G +IV++AL YP + IA NAG +GSV+  K+L  D + YGY++ TG Y +L++ GIIDPTKVVR  +++A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQAISEDLGIKLENVTLNMLGRAKKVMIDKENTTIVSGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIR--TKNDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASV 511          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_VIBHA (60 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 122/236 (51.69%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +EVGL L+KV  E LG A +V +TK+ TTI+     +  +  RVAQIR  IE+A  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  P++ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGIVISEEVGLELEKVALEDLGQAKRVAITKENTTIIDGVGEEAMIQGRVAQIRQQIEDATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEG--DNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVKAGEG-SYGYNAATGEYGDMLEMGILDPTKVTRSALQFAASV 510          
BLAST of CX295040 vs. ExPASy Swiss-Prot
Match: CH601_ROSDO (60 kDa chaperonin 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.669e-57
Identity = 119/236 (50.42%), Postives = 160/236 (67.80%), Query Frame = 2
Query:   20 APGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSV 727
            APGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A KV +TKD TT+V     +  +  RV+QIRT IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA            L++ +  +D ++    N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ K+  SD+  +G+NA T  Y DL + G+IDP KVVR  LE ASSV
Sbjct:  278 APGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTIDMLGTAKKVAITKDETTVVNGAGEKAEIDARVSQIRTQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKALDGLQGA--NPDQNAGIAIVRRALEAPLRQIAENAGVDGSVVAGKIRESDDATFGFNAQTEEYGDLFSFGVIDPAKVVRTALEDASSV 511          
The following BLAST results are available for this feature:
BLAST of CX295040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AGRVS1.278e-5749.5860 kDa chaperonin OS=Agrobacterium vitis (strain S... [more]
CH602_RHIEC1.278e-5749.5860 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH601_VIBPA1.278e-5751.2760 kDa chaperonin 1 OS=Vibrio parahaemolyticus GN=... [more]
CH601_SYNSC1.278e-5752.5460 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_VIBHB1.669e-5751.6960 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_PETMO1.669e-5749.1560 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_ENTS81.669e-5751.2760 kDa chaperonin OS=Enterobacter sakazakii (strai... [more]
CH602_BRAJA1.669e-5748.7360 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_VIBHA1.669e-5751.6960 kDa chaperonin 1 OS=Vibrio harveyi GN=groL1 PE=... [more]
CH601_ROSDO1.669e-5750.4260 kDa chaperonin 1 OS=Roseobacter denitrificans (... [more]

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Properties
Property NameValue
Genbank descriptionC05065H11SK DroRLeaf1 Citrus clementina cDNA clone C05065H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295040 ID=CX295040; Name=CX295040; organism=Citrus clementina; type=EST; length=728bp
GAGGGATTGCTGCTCTTAAGCTCCTGGTTTTGGAGAGCGCAAGAGCCAGT
ACCTTGACGACATTGCTATTTTGACTGGAGGAACTGTAATCAGAGATGAG
GTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGGTCCTAGGTAATGCTTC
TAAAGTTGTGCTCACAAAGGATACCACCACCATTGTGGGGGATGGCAGCA
CCCAGGATGCAGTGAGCAAACGAGTGGCGCAAATCAGAACTCTAATTGAG
AACGCTGAGCAAGACTATGAAAGGGAGAAGCTTAATGAAAGAATTGCTAA
ACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGAGCTCAAACTGAGACAG
AGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAG
GCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAG
ACTCTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAG
AAAAGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAA
TTAATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGT
GCTTTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACT
ACGAAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGA
TGTTGCTTGGAGCATGCTTCCTCGGTGG
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