CX295054
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2) HSP 1 Score: 266.159 bits (679), Expect = 1.156e-70 Identity = 138/184 (75.00%), Postives = 152/184 (82.61%), Query Frame = 1 Query: 136 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 GA S P++ F G LKK + S++ FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 261.922 bits (668), Expect = 2.181e-69 Identity = 137/188 (72.87%), Postives = 151/188 (80.32%), Query Frame = 1 Query: 136 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 GA S P+ SSF G L K VS+ + S ++ FK A EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGE Sbjct: 10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGE 197
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.041e-67 Identity = 130/180 (72.22%), Postives = 146/180 (81.11%), Query Frame = 1 Query: 136 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 666 GA S P+ F G +K +K+ S ++ A E+D+ KQT DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN Sbjct: 10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 186
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 1.728e-66 Identity = 130/183 (71.04%), Postives = 147/183 (80.33%), Query Frame = 1 Query: 136 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 GA S P++ F G LKK V+S + S + + T EN K+ D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE Sbjct: 10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 191
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 251.136 bits (640), Expect = 3.849e-66 Identity = 126/192 (65.62%), Postives = 148/192 (77.08%), Query Frame = 1 Query: 103 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 A PL+ NGS A SVP+S F G+SLKK ++ R P S S + +T + EN++ D+W LA D SDDQ DI RGKG VDSLFQAP GTH + SS++Y SQGLR Y++DN + YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGE Sbjct: 11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGE 199
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.574e-43 Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1 Query: 196 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 +R+ V A ++ A + + RW+ + D SDDQQDITRG+ VD LFQ G G TH AV+SS +Y+SQ ++N N DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGE Sbjct: 18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGE 174
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.297e-25 Identity = 72/129 (55.81%), Postives = 73/129 (56.59%), Query Frame = 1 Query: 289 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 GLAYD SDDQQDITRG VDSLFQAPM GTHYAVMSSY+YISQGLR VPLILGIWGG KMGINPIMMSAGELESGNAGE Sbjct: 1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNAGE 77
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21 Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1 Query: 466 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+ ++S GELES +AG+ Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGD 73
BLAST of CX295054 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21 Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1 Query: 466 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 675 YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI ++S GELES +AG+ Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGD 73 The following BLAST results are available for this feature:
BLAST of CX295054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295054 ID=CX295054; Name=CX295054; organism=Citrus clementina; type=EST; length=676bpback to top |