CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
[Close]
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK--KTKDIGINSKIVE 435
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+ALIIF+   KL++++S  ++K + +Y +  +  +   NS IVE
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVE 86
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MEF2C_MOUSE4.665e-1447.67Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.665e-1447.67Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN4.665e-1447.67Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA4.665e-1447.67Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN4.665e-1447.67Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
back to top