CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.068e-34
Identity = 72/146 (49.32%), Postives = 107/146 (73.29%), Query Frame = 1
Query:  181 KMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQL 618
            K+ RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVAL+IFS RG+LYE+++ S+  TIERY+K   D      I E ++Q+ ++E S +  ++  ++   R +LG+ L      EL+ LE++LE+ +SR+R++K+++
Sbjct:   15 KIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEM 160          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.395e-34
Identity = 75/147 (51.02%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSKIVEDHS-QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQL 618
            M RGK ++KRIEN TSRQVTF KRRNGLLKKA+EL++LCDAE+ALI+FS RG+LYEFS+  S   TIERY+K +     ++ +++ +S Q+ ++E + M  +++ L+ A R L+G+ +   T  EL+ LEN+LE+ +SRIR++K++L
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHEL 147          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN  SRQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RG+L+EFS+ S + KT+ERY+    ++    +    +      +E   + T++EFL+  +R LLG+ L P ++ EL+QLENQ+E SL  IR+ KNQ   +Q
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQ 151          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.822e-34
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN  SRQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RG+L+EFS+ S + KT+ERY+    ++    +    +      +E   + T++EFL+  +R LLG+ L P ++ EL+QLENQ+E SL  IR+ KNQ   +Q
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQ 151          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.301e-34
Identity = 80/149 (53.69%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ +MKRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S  I  TIERY  +  +  +++   E+ +Q   +E + + +K E L    R LLG+ L    + ELQ LE QLE +L+  R RK Q+  E+
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERY-NRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE 627
            M RG  Q++RIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VALI+FS +GKLYEFSS  S+   +ERYQ+ + D     +   +  ++  +E   + +KL+ L+ ++R+LLG+ L+  TI ELQQLE+QLE SL  IR++KNQL  E
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFE 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.042e-34
Identity = 80/149 (53.69%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE 627
            M RG  Q++RIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VALI+FS +GKLYEFSS  S+   +ERYQ+ + D     +   +  ++  +E   + +KL+ L+ ++R+LLG+ L+  TI ELQQLE+QLE SL  IR++KNQL  E
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFE 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.181e-33
Identity = 83/168 (49.40%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLR 687
            M RGK ++KRIEN  +RQVTFSKR++GLLKKA+ELSVLCDAEV+LIIFS  GKLYEFS+  + +TIERY  + KD  +++  +ED +Q  ++E + +  K E L    R L+G+ LE  +I ELQ LE QLE +LS  R +K Q+  EQ              N KL+
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYY-RCKDNLLDNDTLED-TQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLK 166          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 75/150 (50.00%), Postives = 106/150 (70.67%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK  ++RIEN  SRQVTF+KRRNGLLKKA+ELS+LCDAEVAL++FS  G+LY+FSS S + KT+ERYQ+        +    D  Q+  +E  N+   +E L+ ++R LLG+ L P   +EL+QLE+Q+ R+L +IR+RK Q+  ++
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDE 150          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.861e-33
Identity = 76/153 (49.67%), Postives = 111/153 (72.55%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFS-SCSINKTIERYQKKTKDIGINS---KIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN TSRQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+S + ++  TI+RY KK    G  S    I  +  Q+ ++E++ +  +++ L+   + L+GD +   ++ EL+QLE++LE+ +S+IRARKN+L   +
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRY-KKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASE 152          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL5_ARATH1.068e-3449.32Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD21_ORYSJ1.395e-3451.02MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MADS5_ORYSJ1.822e-3452.98MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.822e-3452.98MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL6_ARATH5.301e-3453.69Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD18_ORYSJ9.042e-3453.69MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI9.042e-3453.69MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL13_ARATH1.181e-3349.40Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MAD34_ORYSJ5.861e-3350.00MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD13_ORYSJ5.861e-3349.67MADS-box transcription factor 13 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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