CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.997e-33
Identity = 80/151 (52.98%), Postives = 103/151 (68.21%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC--SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN T+RQVTFSKRR GLLKKA ELSVLCDAE+ LIIFS  GKL+E+SS   S+ K IERYQK +      ++I E  +QH   E + M  + E L+   R+++G+ L   T+ EL  L  QLE + SR+R+RKNQL  +Q
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVS-----GARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQ 146          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.227e-32
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVE-DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN+T+RQVTFSKRR GLLKKA EL+VLCDA V ++IFS  GK++E+ S  CS+ + IE+YQ  T     NS   E +H Q    E + M  ++E LE   R+  GD L   T+D++  LE QLE S+S++RARK+QL  +Q
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT-----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQ 147          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 76/150 (50.67%), Postives = 107/150 (71.33%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S S +NKT+ERYQ+ +    + +      ++ + +E   +  K++ L+ + R LLG+ L   +  EL+QLE+QL++SL +IR+ K Q   +Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYG-SLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQ 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 80/153 (52.29%), Postives = 108/153 (70.59%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCSINKTIERYQK---KTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SS S+ KT+ERYQK      +  I+++   + S  +++E   +  + E L+ ++R LLG+ L P    EL+ LE QL+ SL +IR+ + QL  +Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEIS--SQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQ 151          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 79/151 (52.32%), Postives = 107/151 (70.86%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCSINKTIERYQK-KTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SS ++ KT++RYQK     I +N+K  ++  +++  E   +  + E L+  +R LLG+ L P    EL+QLE QL+ SL ++R+ K Q   +Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKE-LENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQ 150          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 76/149 (51.01%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE 627
            M RGK Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIIFS +GKLYE+++ S ++K +ERY++ +    +      D   +   E   +  K+E ++  ++ L+G+ LE   + ELQQLE QLE SL  IR+RK+QL  E
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLE 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 80/153 (52.29%), Postives = 105/153 (68.63%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCSINKTIERYQKKT---KDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S  S+ +T+ERYQK +    D  I +K   +  Q ++ E   +  ++E L+  +R LLG+ L    I EL+QLE QL+ SL  IR+ + Q   +Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNK-ENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQ 152          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 75/149 (50.34%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE 627
            M RGK Q+KRIEN  +RQVTFSKRR+GLLKKA E+SVLCDAEVALIIFS +GKLY++++ S ++K +ERY++ +    +      D   +   E   +  K+E ++  ++ L+G+ LE   + ELQQLE QLE SL  IR+RK+QL  E
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLE 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 78/151 (51.66%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQK-KTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LI+FS RGKLYEF S S + KT+ERYQK     I +N+K  ++  +++  E   +  + E L+  +R LLG+ L P    EL+QLE QL+ SL ++R  K Q   +Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKE-LENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQ 150          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 78/153 (50.98%), Postives = 104/153 (67.97%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGINSKIVEDHSQHAKE----ETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFRE 627
            M RG+ ++KRIEN  +RQVTFSKRR GLLKKA E+SVLCDAEV+LI+FS +GKL+E+SS S + K +ERY++ +        I  D   +A+     E S +  K+E LE  +R  LG+ LEP ++ +LQ LE QLE +L  IR+RKNQL  E
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYS--YAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNE 151          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
GGM13_GNEGN9.997e-3352.98MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
M17_MAIZE2.227e-3250.66MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
CMB1_DIACA2.909e-3250.67MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
AGL9_PETHY2.909e-3252.29Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP1_ARATH6.480e-3252.32Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MAD14_ORYSJ6.480e-3251.01MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MADS8_ORYSJ1.444e-3152.29MADS-box transcription factor 8 OS=Oryza sativa su... [more]
MAD14_ORYSI1.444e-3150.34MADS-box transcription factor 14 OS=Oryza sativa s... [more]
SEP2_ARATH1.885e-3151.66Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
CAL_ARATH2.462e-3150.98Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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