CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 70/152 (46.05%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAK---EETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK  ++RI+N+TSRQVTFSKRRNG+ KKA EL++LCDAEV L+IFS  G+LYE+SS S+   I+RY  K+KD     + V + +   K    E +++  +L  L+   R+L+G+ L    + ELQ LENQLE SL  +R +K+ +  ++
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRY-GKSKD---EQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 70/171 (40.94%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHA--KEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLRE 690
            M RGK  +KRI+N  +RQVTFSKRR GL+KKA EL++LCDA+V LI+FS  G+LY+FSS S+   IERYQ+  ++   + +++   S+    + E + +  +++ L    R+LLG+ +   T+ +LQ L+NQ+E SL  IR +K+QL  E+              N++LR+
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEE---HCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGSLVQKENSELRK 168          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 73/151 (48.34%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN TSRQVTFSKRR GLLKK  ELSVLCDA++ LIIFS +GKL+E+ S   S+++ I RY + T      S  VED+     +E + M      L+++ ++  GD L     +EL +LE QLE +L++IRARK +L ++Q
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTG----ASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQ 150          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.683e-28
Identity = 72/169 (42.60%), Postives = 104/169 (61.54%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIG-INSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLR 687
            M R + ++KRIE+A +RQVTFSKRR GL KKA ELSVLCDA+VALI+FS  GKL  F+S S+N+ I++Y   + ++G      ++ + +H+K   +++  +L    +  R++ G+ LE  +IDELQQLE  LE  L R+   K+Q F EQ              N +LR
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKYNTHSNNLGKAEQPSLDLNLEHSK--YAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLR 167          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.265e-27
Identity = 76/152 (50.00%), Postives = 94/152 (61.84%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIER---YQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIENA SRQVTFSKRR GLLKKA ELSVLCDAEVA+I+FS  GKL+EFSS S+ KT+ R   YQ  +   GIN K     +Q    E   +  ++  L+     + G  L   ++ ELQ LE QL  SL  +R RK  L  +Q
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCK---TENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQ 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 68/151 (45.03%), Postives = 100/151 (66.23%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQ--HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK  ++RI+++TSRQVTFSKRR GL+KKA EL++LCDAEV LIIFS  GKLY+F+S S+   I+RY K   +     +++   S+    + E + +  +L  L+   R+++G+ L   +++EL  LENQ+E SL  IR RK QL  ++
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIE---QQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 62/154 (40.26%), Postives = 103/154 (66.88%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVEDHSQ---HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK Q++RIEN  SRQVTFSKRR GLLKKA E++VLCD +VA I+FS +G L+ ++S   ++ + +E+Y +  + +   + ++E+  +       +   +  ++E L+ ++R L+G  L+  T+ ++QQLENQ++ SL+ IR+RK +L  E+
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRH-ELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEK 153          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.063e-26
Identity = 66/152 (43.42%), Postives = 100/152 (65.79%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEP-CTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M +GK +MKRIE+AT RQVTFSKRR G LKKA EL+VLCDA+V +++FS +GKL++F S    + +   RY+  T++  +     +D  +    E + +  +++ LE + R+  G+ L    T+DEL QL+ QLE SLS++ ARK++L  +Q
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDD--EQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQ 150          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.063e-26
Identity = 72/176 (40.91%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI------GINSKIVEDHS-QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLRE 690
            M R K Q+K+I+N+T+RQVTFSKRR GL KKA ELSVLCDA+VALIIFS  GKL+++SS S+ + +ER    +K++       +  ++VE+ +     +E S    +L       R++ G+ L+   I+ELQQLE  LE  LSR+  RK      +              N KLR+
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRL-------RQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQ 169          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: SVP_ARATH (MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 71/175 (40.57%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI------GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLRE 690
            M R K Q+++I+NAT+RQVTFSKRR GL KKA ELSVLCDA+VALIIFS  GKL+EF S S+ + +ER+  ++K++       +  ++VE +S HA+     M  ++       R++ G+ L+   I+ELQQLE  LE  L+R+   K+     +              N +LR+
Sbjct:    1 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSSSMKEVLERHNLQSKNLEKLDQPSLELQLVE-NSDHAR-----MSKEIADKSHRLRQMRGEELQGLDIEELQQLEKALETGLTRVIETKSDKIMSEISELQKKGMQLMDENKRLRQ 169          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD27_ORYSJ5.677e-2846.05MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD25_ORYSJ5.677e-2840.94MADS-box transcription factor 25 OS=Oryza sativa s... [more]
FBP24_PETHY5.677e-2848.34MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD22_ORYSJ9.683e-2842.60MADS-box transcription factor 22 OS=Oryza sativa s... [more]
AGL15_BRANA1.265e-2750.00Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL21_ARATH2.817e-2745.03Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD20_ORYSJ5.313e-2640.26MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD30_ORYSJ9.063e-2643.42MADS-box transcription factor 30 OS=Oryza sativa s... [more]
JOIN_SOLLC9.063e-2640.91MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
SVP_ARATH1.184e-2540.57MADS-box protein SVP OS=Arabidopsis thaliana GN=SV... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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