CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 69/156 (44.23%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVEDHSQHAK-----EETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIEN TSRQVTFSKRR+GL+KK  ELSVLCDA++ LI+FS +GKL E+ +   S+ + I+RY K     GI  ++      HA      +E + M  +   L++  ++  GD L     +EL +LE  L++SL+++RARK +L  EQ
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAK---GILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQ 153          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.672e-25
Identity = 65/152 (42.76%), Postives = 95/152 (62.50%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDIGINSKIVE-DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RG+ ++K+IEN T+RQVTFSKRR GLLKKA EL++LCDA++ +I+FS  GK+YE+SS    I    +RY K       +++  E D  Q   +E + M  +   L +  R+ +GD L   T+ ++  LE Q+E SL ++R RK QL  +Q
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLKAP-----STRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQ 147          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.709e-24
Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQL 618
            M R K ++KRIEN +SRQVTFSKRRNGL++KA +LSVLCDA VAL++ S  GKLY FSS  ++ K ++RY K+  D   + K ++  S     +  N  +  E LE+   KL+G  ++  +ID L QLE  LE +LS  RA+K +L
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD---DLKALDHQS-----KALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTEL 138          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQ--HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK  +++I+++TSRQVTFSKRR GL+KKA EL++LCDAEV LIIFS   KLY+F+S S+  TIER+     +     +++   S+    + E   +  +L  L+   R+L G  L   ++ ELQ +E+QLE SL  IR ++ Q+   +
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKME---EQELMNPASEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSLRGIRMKREQILTNE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.915e-24
Identity = 65/191 (34.03%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSK------------IVEDHS----------QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLRE 690
            M R + +++RIE+A +RQVTFSKRR GL KKA EL+VLCDA+VAL++FS  GKL +F+S ++N+ I++Y   +K++G   K            ++  ++          Q    + S++  +L    +  R++ G+ LE  +++ELQQ+E  LE  L R+   K+Q F ++              N +LR+
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRD 191          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 59/147 (40.14%), Postives = 96/147 (65.31%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 624
            M RGK ++KRIEN+++RQVT+SKRRNG+LKKA E+SVLCDA V++IIF+  GK++EFSS S+   +++Y K T       ++++   ++   E + +    + +++  R L G+ +      EL  LE+ LE  L+ IR ++N++ R
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLT-----GRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLR 142          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 59/147 (40.14%), Postives = 94/147 (63.95%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 624
            M RGK ++KRIEN+++RQVT+SKRRNG+LKKA E+SVLCDA V++IIF+  GK++EFSS S+   +++Y K T       ++ +   ++   E + +    + +++  R L G+ +      EL  LE+ L+  L+ IR ++N L R
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLT-----GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLR 142          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 63/150 (42.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            MVRGK QM+RIEN   RQVTF KRR GLLKKA ELSVLCDA+V +IIFS +GKL+E  ++ +++  +ERYQ       +    ++   Q A++    +  +++ L+   R   G G    T+D+L  LE  LE  + +IR  K Q+ +++
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQ-RQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQE 149          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 62/146 (42.47%), Postives = 93/146 (63.70%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQL 618
            M R K ++KRIEN +SRQVTFSKRRNGL++KA +LS+LC++ +A+++ S  GKLY+ +S  +++K I+RY+    D        E  +    E+T N +   E LE+ + KL    ++  ++D L  LE QLE +LS  RARK +L
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHAD--------ELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTEL 138          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 61/149 (40.94%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK Q+KRIEN T+RQVT+SKRRNGL KKA EL+VLCDA+V++I+ S  GKL+EF S SI  T + +    K +G++  +   H +  +E+   +      L    R+ +G+ L     ++L++L   ++ SL  IR RK ++   Q
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSIT-TKQLFDLYQKTVGVD--LWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQ 146          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
DEF21_ANTMA3.444e-2544.23MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MAD31_ORYSJ7.672e-2542.76MADS-box transcription factor 31 OS=Oryza sativa s... [more]
FLC_ARATH1.709e-2447.26MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
AGL17_ARATH2.232e-2442.38Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
MAD55_ORYSJ2.915e-2434.03MADS-box transcription factor 55 OS=Oryza sativa s... [more]
FBP1_PETHY3.808e-2440.14Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
GLOB_TOBAC8.483e-2440.14Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD33_ORYSJ5.498e-2342.00MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL31_ARATH1.600e-2242.47Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MADS1_PETHY2.089e-2240.94Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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