CX295065

Overview
NameCX295065
Unique NameCX295065
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++K+IEN T+RQVTFSKRR GL+KK  ELS+LCDA + LI+FS  GKL EF S   N+  +   +     G+      D  +    E   +  +   LE+  R   G  L     +EL  LE QLE S+ ++R RKN+L ++Q
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCS-EQNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQ 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 65/156 (41.67%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGINSKIVEDHS-----QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK ++KRIENAT+RQVT+SKRR G++KKA EL+VLCDA+VA+I+FS  GK +EF S S  I    +RYQ+    IG +  I +  +      H K+   N+ T++       R+ +G+ L+    DEL+ LE  ++ +L  +R RK  +   Q
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA---IGTSLWIEQYENMQRTLSHLKDINRNLRTEI-------RQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQ 146          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQ 615
            M RG++++KRIEN T RQ TF KRR+GL KKA EL+VLCDA++ L++FS  GKLY F S    S+ + +ERY+  T     ++K+  D  Q  + E   + +  + LE   R +  D  E  T+  L+ LE+ LE ++ ++R+ K++
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATT-----HTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDR 142          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.354e-21
Identity = 56/167 (33.53%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  190 RGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXRNTKLRE 690
            R +  ++RI+N  +RQVTFSKRR GL KKA ELS+LCDAEV L++FS  GKL++F+S S+ + I+RY   +K +        D         + +  +L    +  R++ G+ L    +++LQ+LE  LE  L  +   K++   ++              N +L+E
Sbjct:   22 RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIEENLRLKE 188          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGD-GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK Q++RIEN   RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+ ++  ++ + IERY+  +   G  +    D     K+E   +  ++  L+   R + G+   E  T++EL  LE  LE  +  IR+ K Q+  ++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS---GEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGD-GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK Q++RIEN   RQVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+ ++  ++ + IERY+  +   G  +    D     K+E   +  ++  L+   R + G+   E  T++EL  LE  LE  +  IR+ K Q+  ++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSAS---GEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQE 148          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.310e-21
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQKKT-KDIGINSKIVEDHSQ------HAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQ 630
            M RGK Q+KRIEN   RQVTF KRR GLLKKA ELSVLCDAE+ ++IFSP+GKL+E ++  ++   I++Y K T    G +S       Q        K+E + +  ++E L+     + G G     ++EL  LE  LE  +S+IR+ K  +  ++
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQE 157          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 60/142 (42.25%), Postives = 85/142 (59.86%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS--CSINKTIERYQKKTKDI--GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRI 597
            M RGK ++KRIEN+T+RQVTFSKRR+G+LKKA E+SVLCDAEV ++IFS  GKLY++ S   S+++ +E+YQ  +  I      K +       K+E  NM  +L       R L G+ L      EL  +E  L+  +  +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIEL-------RHLKGEDLNSLQPKELIMIEEALDNGIVNV 135          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.778e-21
Identity = 61/148 (41.22%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAK------RKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 609
            M RGK Q+KRIEN T+RQVT+SKRRNGL KKA EL+VLCDA V++I+FS   KL+E+ S +           TK+I    + + D    A +      TK + LE  +      ++ LG+ L+   I EL++LE+++E +   +R RK
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTT---------TKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERK 139          
BLAST of CX295065 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.956e-20
Identity = 54/149 (36.24%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  184 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR 624
            M RGK ++KRIEN+++RQVT+SKRRNG++KKA E+SVLCDA V++IIF+  GK++EF S S  +   ++ Y K +       ++ +   +H   E + +  + + +++  R L G+ +      EL  LE+ LE   S ++ ++ +  R
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLS-----GKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVR 144          
The following BLAST results are available for this feature:
BLAST of CX295065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
TT16_ARATH4.655e-2241.61Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD16_ORYSJ4.655e-2241.67MADS-box transcription factor 16 OS=Oryza sativa s... [more]
MAD32_ORYSJ7.940e-2240.14MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MAD47_ORYSJ1.354e-2133.53MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD26_ORYSJ1.769e-2139.74MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI1.769e-2139.74MADS-box transcription factor 26 OS=Oryza sativa s... [more]
AGL12_ARATH2.310e-2140.76Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MADS2_ORYSJ8.778e-2142.25MADS-box transcription factor 2 OS=Oryza sativa su... [more]
AP3_ARATH8.778e-2141.22Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
GLOB_ANTMA1.956e-2036.24Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]

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Properties
Property NameValue
Genbank descriptionC05068B12SK DroRLeaf1 Citrus clementina cDNA clone C05068B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295065 ID=CX295065; Name=CX295065; organism=Citrus clementina; type=EST; length=692bp
TCTAGGGCTTCTCAAGATTTTATTGCAAGAGAAATTTCTATAATTATCAT
TGTCTCTCTTGTTCATCCACTGGAGCTTTCACAGACCCATCGAATCTCTT
TTTCAGCACTTTCCTAATTTGTTTTTATTTCAGTTTATTCTCTCATTCTA
TCTTTGGAAACTTTTAGGAGTAGGAGAGTGAAAATGGTGAGGGGCAAAAC
CCAGATGAAGAGAATAGAAAATGCAACAAGCAGGCAAGTTACTTTCTCAA
AGCGAAGAAATGGGCTGCTCAAAAAGGCCTTTGAGTTATCGGTTCTTTGT
GATGCCGAAGTTGCACTAATTATCTTCTCCCCCAGAGGCAAGCTCTACGA
GTTCTCTAGTTGTAGTATTAACAAGACCATAGAACGCTATCAGAAGAAAA
CCAAAGATATTGGAATCAACTCCAAAATAGTAGAAGATCATTCACAGCAT
GCCAAGGAAGAGACTTCAAACATGATGACGAAGCTTGAGTTTCTTGAAGT
GGCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATG
AGCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGG
GCAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAA
GGAAAAAATCCTCATTGAAAGAAATACGAAGCTGCGAGAGCA
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