CX295067

Overview
NameCX295067
Unique NameCX295067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 87/205 (42.44%), Postives = 111/205 (54.15%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI+A  S+P FG T       RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT                    V  A N+  GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:   99 NAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 88/205 (42.93%), Postives = 112/205 (54.63%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFITA  S+P FG T DT    +EVAAFF   +HETT              +C+ +E+N A  +C  S  +PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ VA D VI+FK A+WFWMT        H+ +                 G+G     ING  ECG     +V DR+  Y  YC  FGV+PG  L+C
Sbjct:  116 NAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDC 320          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.335e-34
Identity = 85/205 (41.46%), Postives = 111/205 (54.15%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI+A  S+P FG T       RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D +ISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:   97 NAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 301          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 88/205 (42.93%), Postives = 110/205 (53.66%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT-DTN---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI A  S+P FG + D N   RE+AAFFA  +HETT              +C++ E+     +C  S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALWFWMT                       A N+  GFG     ING  ECG    ++V DR+  Y  YC   GV PG  L+C
Sbjct:  109 NAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDC 313          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 87/205 (42.44%), Postives = 108/205 (52.68%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAF+ A N++P FG T +     R+VAAF A  +HETT              +C+ +E+  A  +CT S Q+PCA GK YYGRGPIQL+ N NY  AGRAIG D L +P+ VA D  +SFKTALWFWMT        H+ +                 GFG     ING  ECG     +V DR+  Y  YC   GV  G  L+C
Sbjct:   55 DAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDC 259          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 87/205 (42.44%), Postives = 108/205 (52.68%), Query Frame = 3
Query:    3 DAFITALNSYPEFGR----TDTNREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT-------------------YVHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI A  S+P FG     T   RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALWFWMT                       A N+  GFG     ING  ECG     +V DR+  Y  YC   GV PG  L+C
Sbjct:  105 NAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 309          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.278e-34
Identity = 85/205 (41.46%), Postives = 110/205 (53.66%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AF+TA  S+P FG T       RE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:  103 NAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDC 307          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.975e-34
Identity = 87/205 (42.44%), Postives = 110/205 (53.66%), Query Frame = 3
Query:    3 DAFITALNSYPEFGR----TDTNREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI A  S+P FG     T   RE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALWFWMT               +  SA ++      GFG     ING  ECG     +V DR+  Y  YC   GV PG  L+C
Sbjct:  110 NAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 314          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.885e-34
Identity = 85/205 (41.46%), Postives = 110/205 (53.66%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDT----NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT---------------YVHSALNQ------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI+A  S+P FG T       RE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+A+WFWMT               +  S  +Q      GFG     ING  ECG  +  +V DR+  Y  YC   GV PG  L+C
Sbjct:   99 NAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDC 303          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.074e-34
Identity = 84/204 (41.18%), Postives = 105/204 (51.47%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT-DT---NREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAFI A  +YP FG T DT    RE+AAF    +HETT              +C++ E+N +     +PQ+PCA G+ YYGRGPIQ++ N NY   GRAIG D LN P+ VA D VISFK+ALWFWMT        H  +                 G+G     ING  ECG     +V DR+  +  YC   GV  G  L+C
Sbjct:  106 DAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDC 309          
The following BLAST results are available for this feature:
BLAST of CX295067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI1_SOLTU3.514e-3542.44Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH5.994e-3542.93Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_SOLTU1.335e-3441.46Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU1.744e-3442.93Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIC_SECCE1.744e-3442.44Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_TOBAC1.744e-3442.44Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHIC_SOLLC2.278e-3441.46Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_TOBAC2.975e-3442.44Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_SOLTU3.885e-3441.46Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_PHAVU5.074e-3441.18Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05068C02SK DroRLeaf1 Citrus clementina cDNA clone C05068C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295067 ID=CX295067; Name=CX295067; organism=Citrus clementina; type=EST; length=678bp
GAGATGCATTTATTACTGCTCTCAATTCGTATCCTGAATTTGGCAGAACT
GATACTAATCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAAC
AACAGATTTTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTA
CATCTCCACAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGA
CCGATTCAGCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCAT
CGGTTTCGACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCA
TATCTTTCAAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCA
CTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGA
ATGCGGTGGCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACA
CTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGC
TGAATAGATATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTA
TCACAATAAGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCT
GACGGAATAATTTTCTTGTACCTGATCATGAAATAAAGAGAAAAATAATG
GATAATTAAAAAAAAAAAAAAAAAAAAA
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